Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0708
(701 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical pr... 38 0.009
AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical ... 38 0.009
AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical... 38 0.009
AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical ... 36 0.021
AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical ... 30 1.8
X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein. 29 4.3
AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and gl... 29 4.3
Z77134-4|CAE17934.1| 148|Caenorhabditis elegans Hypothetical pr... 27 9.8
U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine rece... 27 9.8
AF067943-9|AAC17667.1| 348|Caenorhabditis elegans Seven tm rece... 27 9.8
>U58746-8|AAB00629.1| 339|Caenorhabditis elegans Hypothetical
protein R05G6.2 protein.
Length = 339
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = -1
Query: 476 LHDNVRPHTAQQTVSKLL*S*QAGSFASPPHSLTLLDLVLMEFNFFQSLHYFLVRKKINT 297
LHDN RPH A++T KL Q + PH DL +++ F SL ++ K+ +
Sbjct: 240 LHDNARPHVAKKTFQKL----QDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDD 295
Query: 296 QLHKIIVMSIFAS 258
+ H +S F S
Sbjct: 296 EEHLKTELSTFFS 308
>AC024800-4|AAF60722.1| 514|Caenorhabditis elegans Hypothetical
protein Y49F6A.4 protein.
Length = 514
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = -1
Query: 476 LHDNVRPHTAQQTVSKLL*S*QAGSFASPPHSLTLLDLVLMEFNFFQSLHYFLVRKKINT 297
LHDN RPH A++T KL Q + PH DL +++ F SL ++ K+ +
Sbjct: 215 LHDNARPHVAKKTFQKL----QDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDD 270
Query: 296 QLHKIIVMSIFAS 258
+ H +S F S
Sbjct: 271 EEHLKTELSTFFS 283
>AC006769-12|AAF60591.1| 384|Caenorhabditis elegans Hypothetical
protein Y45G12C.13 protein.
Length = 384
Score = 37.5 bits (83), Expect = 0.009
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = -1
Query: 476 LHDNVRPHTAQQTVSKLL*S*QAGSFASPPHSLTLLDLVLMEFNFFQSLHYFLVRKKINT 297
LHDN RPH A++T KL Q + PH DL +++ F SL ++ K+ +
Sbjct: 240 LHDNARPHVAKKTFQKL----QDLGWTVLPHPPYSPDLAPTDYHLFLSLSDYMRDKQFDD 295
Query: 296 QLHKIIVMSIFAS 258
+ H +S F S
Sbjct: 296 EEHLKTELSTFFS 308
>AC006747-1|AAF60509.1| 311|Caenorhabditis elegans Hypothetical
protein Y39A3A.1 protein.
Length = 311
Score = 36.3 bits (80), Expect = 0.021
Identities = 23/62 (37%), Positives = 31/62 (50%)
Frame = -1
Query: 485 VLPLHDNVRPHTAQQTVSKLL*S*QAGSFASPPHSLTLLDLVLMEFNFFQSLHYFLVRKK 306
+L LHDN RPHTA +T KL Q PH DL +++ F+SL L +K
Sbjct: 209 LLLLHDNARPHTALKTRQKL----QTLGIEVLPHPPYSPDLAPTDYHLFRSLQNHLAGQK 264
Query: 305 IN 300
+
Sbjct: 265 FH 266
>AL110479-6|CAB54354.2| 447|Caenorhabditis elegans Hypothetical
protein Y105C5B.8 protein.
Length = 447
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 114 WLFSIQTACNVFYQICYCY*LLNAFMVSMRLCRRSGNF 227
W+ Q+ ++F+Q+ Y +LN FM + R + NF
Sbjct: 103 WVRIFQSFSSIFFQLFYIAVVLNTFMAKFQFWRSNENF 140
>X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 GW-GSRCNYT*DLRTYISGGWRICVQELVHPSKP*KNKMDER 686
GW G C D R ICV ++HPS+P + +E+
Sbjct: 160 GWMGPHCGQAVDPRKCSCENDGICVSSMIHPSQPNQTSSNEQ 201
>AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein2 protein.
Length = 402
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 564 GW-GSRCNYT*DLRTYISGGWRICVQELVHPSKP*KNKMDER 686
GW G C D R ICV ++HPS+P + +E+
Sbjct: 160 GWMGPHCGQAVDPRKCSCENDGICVSSMIHPSQPNQTSSNEQ 201
>Z77134-4|CAE17934.1| 148|Caenorhabditis elegans Hypothetical
protein R09H10.6 protein.
Length = 148
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 538 HGRNRRGDGTTYKRSYHQFCPYMITFDLIQHNRRSLSYYN 419
HG + GDGT K+ Y ++ L +H RRS ++N
Sbjct: 72 HGFDTNGDGTVTKKEYEEYFK-----RLEKHKRRSDMFFN 106
>U50311-5|AAX22295.1| 299|Caenorhabditis elegans Serpentine
receptor, class sx protein34, isoform c protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 326 YFLVRKKINTQLHKIIVMSIFASVT*IL 243
YFLVRKK Q K + SIF + T ++
Sbjct: 184 YFLVRKKETGQKFKAVFKSIFITATLVI 211
>AF067943-9|AAC17667.1| 348|Caenorhabditis elegans Seven tm
receptor protein 114 protein.
Length = 348
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Frame = -2
Query: 547 LLLHGRNRRGDGTTYKRSYHQFCPYMITFDLIQHNRRSLSYYNLNKLEVLRHHR 386
+LL G++ G GT Y+ FC + + F +++ R L ++ N + VL+ R
Sbjct: 30 VLLSGKSIDGIGT-YRYLMITFCVFSLLFTILEDFIRPLMHHYNNTIIVLQRKR 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,105
Number of Sequences: 27780
Number of extensions: 341334
Number of successful extensions: 860
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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