Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0707
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4YPP6 Cluster: Putative uncharacterized protein; n=4; ...    33   3.9  
UniRef50_Q182Z9 Cluster: AraC-family transcriptional regulator; ...    32   9.1  

>UniRef50_Q4YPP6 Cluster: Putative uncharacterized protein; n=4;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 681

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 30/110 (27%), Positives = 49/110 (44%)
 Frame = -3

Query: 466 KNKTCQRQVVSVHCQVLVTVERSQEGRNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNV 287
           KNK     ++ + C    T E + + +N   + +RI    ++      S  ++  SL+N+
Sbjct: 310 KNKIASMNILQLCCYNYNTFETNIQTKNQLFVDLRIEEHNIITALLYTSTKMKLTSLENL 369

Query: 286 PLNYLRCVFIFKTNKQKYPCS*NFKILPSDCLLKFFKHIYLIYMYH*YKN 137
               + C F  K  K KY       ILP+   + F + IY IY Y  Y+N
Sbjct: 370 FDKLISC-FEDKQFKSKY-----LNILPAYKNV-FERRIYFIYFYRLYQN 412


>UniRef50_Q182Z9 Cluster: AraC-family transcriptional regulator;
           n=2; Clostridium difficile|Rep: AraC-family
           transcriptional regulator - Clostridium difficile
           (strain 630)
          Length = 289

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +2

Query: 17  ILVSNDISHLMNKITY*LLSCDNFFSISNKEIHDPKVYTNVF 142
           I ++ ++++ ++ I Y L   D  F ISN EIH P + +NVF
Sbjct: 37  IFINGNVTYFVDGIPYKLKPWDILF-ISNNEIHKPVIDSNVF 77


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 499,504,650
Number of Sequences: 1657284
Number of extensions: 9322224
Number of successful extensions: 17281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 16522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17257
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)