Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0707
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   1.2  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    28   1.2  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   4.9  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    26   4.9  
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    25   8.5  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 314 VLTVQLVDWK*LNHYYPHLQRPEVS 388
           ++ +QL+DW   N+Y  HL++ EV+
Sbjct: 212 LIIIQLIDWWQSNNYESHLKKGEVA 236


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/64 (29%), Positives = 35/64 (54%)
 Frame = +2

Query: 143 ILVIHIN*IYMFKKFQ*AVAWQYFKILTAWVLLFVCFEYEYTPQVIXWYILQAPVLKVLT 322
           I ++ I  IY+  K +  + W +F ++T   +LF+ F  + T +V    +L   +LKV+T
Sbjct: 53  IALVIITQIYVGYKTK-NIGWNFFSVVTYCFVLFLQFAEQSTLRVPMASLLIFWLLKVVT 111

Query: 323 VQLV 334
             L+
Sbjct: 112 SLLI 115


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -3

Query: 367 MRIVMIQLLPI-HQLNSQNLQHRSLKNVPLNYL-RCV 263
           + ++ +++ P  H+L S N+ H    ++PL+++ RCV
Sbjct: 417 LEVIPVKIYPYAHELISLNVSHNLSLDLPLDFMERCV 453


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 284 WYILQAPVLKVLTVQLVDWK*LNHYYPHL 370
           W I +   L V   +++DWK L+ Y  HL
Sbjct: 376 WLIERMMDLNVAEERMIDWKCLSEYANHL 404


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 459 LFFKENKSYFFTIKGV-CLEMNFSN*IFDLSYW 554
           L  K+N S    IK V CL+ NF N  F LS W
Sbjct: 424 LSIKDNISKSRAIKFVDCLKSNFENPEFVLSRW 456


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,269,824
Number of Sequences: 5004
Number of extensions: 45932
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)