Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0707
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70782-5|CAA94843.1|  322|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z70782-5|CAA94843.1|  322|Caenorhabditis elegans Hypothetical
           protein R04B5.7 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 340 PIHQLNSQNLQHRSLKNVPLNYL 272
           P H +N  N Q   +KN PL+YL
Sbjct: 247 PAHHMNPANTQQIQVKNEPLDYL 269


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = -3

Query: 412  TVERSQEGRNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPLNYLRCVFIFKTNKQKY 233
            T E  +E R   S K ++VM ++L   +  S+N    S + +  ++    F F     K 
Sbjct: 931  TTENKEEKRK--SNKRKVVM-EILGCDE--SRNFALVSCR-LDTSHKSVTFQFAPGTDK- 983

Query: 232  PCS*NFKILPSDCLLKFFKHI 170
            PC+   K+L  DCLLK   HI
Sbjct: 984  PCTIATKLLAEDCLLKVHVHI 1004


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 26/81 (32%), Positives = 39/81 (48%)
 Frame = -3

Query: 412  TVERSQEGRNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPLNYLRCVFIFKTNKQKY 233
            T E  +E R   S K ++VM ++L   +  S+N    S + +  ++    F F     K 
Sbjct: 931  TTENKEEKRK--SNKRKVVM-EILGCDE--SRNFALVSCR-LDTSHKSVTFQFAPGTDK- 983

Query: 232  PCS*NFKILPSDCLLKFFKHI 170
            PC+   K+L  DCLLK   HI
Sbjct: 984  PCTIATKLLAEDCLLKVHVHI 1004


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,255,319
Number of Sequences: 27780
Number of extensions: 243813
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)