Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0707
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19540.1 68416.m02477 expressed protein contains Pfam profile...    29   2.4  
At2g38830.1 68415.m04771 tumor susceptibility protein-related co...    28   4.1  
At4g13410.1 68417.m02094 glycosyl transferase family 2 protein s...    28   5.5  
At2g16130.1 68415.m01849 mannitol transporter, putative similar ...    27   9.6  
At2g16120.1 68415.m01848 mannitol transporter, putative similar ...    27   9.6  

>At3g19540.1 68416.m02477 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 485

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 388 RNLWSLKMRIVMIQLLPIHQLNSQNLQHRSLKNVPLNYLRCVFIFK 251
           RN   L + ++   L PIH  +S  L H S+KN P+      +I +
Sbjct: 127 RNDLRLLLGVMGAPLAPIHVSSSDPLPHLSIKNTPIETSSAQYILQ 172


>At2g38830.1 68415.m04771 tumor susceptibility protein-related
           contains weak similarity to Swiss-Prot:Q99816 tumor
           susceptibility gene 101 protein [Homo sapiens]
          Length = 331

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -3

Query: 466 KNKTCQRQVVSVHCQVLVTVERSQEG-RNLWSLKMRI 359
           + +   R   S+H  VL  +ERS+E   NLW L+  +
Sbjct: 174 RTEALDRLATSLHYDVLTIMERSEEEIENLWKLQSEV 210


>At4g13410.1 68417.m02094 glycosyl transferase family 2 protein
           similar to beta-(1-3)-glucosyl transferase GB:AAC62210
           GI:3687658 from [Bradyrhizobium japonicum], cellulose
           synthase from Agrobacterium tumeficiens [gi:710492] and
           Agrobacterium radiobacter [gi:710493]; contains Pfam
           glycosyl transferase, group 2 family protein domain
           PF00535
          Length = 537

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 190 LKFFKHIYLIYMYH*YKNICIHFWIMYFF 104
           +K +K  Y+IY +   + I +HF+  +F+
Sbjct: 364 VKIWKKFYVIYSFFFLRKIVVHFFTYFFY 392


>At2g16130.1 68415.m01849 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 511

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +2

Query: 119 PKVYTNVFILVIHIN*IYMFKKFQ*AVAWQYFKILTAWVLLFVCFEYEYTPQVIXWYILQ 298
           P+++ N+ IL+ +++  Y F K    + W++   + A   +F+       P+   W ++Q
Sbjct: 157 PEIFINIGILLGYVS-NYFFAKLPEHIGWRFMLGIGAVPSVFLAIGVLAMPESPRWLVMQ 215


>At2g16120.1 68415.m01848 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 511

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +2

Query: 119 PKVYTNVFILVIHIN*IYMFKKFQ*AVAWQYFKILTAWVLLFVCFEYEYTPQVIXWYILQ 298
           P+++ N+ IL+ +++  Y F K    + W++   + A   +F+       P+   W +LQ
Sbjct: 157 PEIFINIGILLGYVS-NYFFSKLPEHLGWRFMLGVGAVPSVFLAIGVLAMPESPRWLVLQ 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,958,626
Number of Sequences: 28952
Number of extensions: 204410
Number of successful extensions: 363
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)