Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0706
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   3.4  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   3.4  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.5  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   4.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    26   6.0  
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz...    25   7.9  

>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 496 PVLCAFRSMSWRRILLEYPVPVIEHGMRNRFH 401
           P +CA     W    LE  +P+  H  +N  H
Sbjct: 58  PTICAKLEKKWNAYCLENNIPISTHNEQNDSH 89


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 531 RLALLQSRFESVRLQDMGNTLRKKACSKPHPNLESLKTSLIKAA 662
           RL  L+S F+S+ LQD   TLR      P   + +L +S + ++
Sbjct: 108 RLKTLESWFQSLSLQDRLTTLRTLLHHLPSQEISTLLSSSLTSS 151


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 425  FNNRHWVFQQDSAPAHRAKSTQDW 496
            FNN +W  ++++  AH A    +W
Sbjct: 1280 FNNEYWKIREEAGEAHLAGKEFEW 1303


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 700 LSQHGTRSMSISAAALIKDVLSDSKL 623
           LS   +R++SIS   +++DV SDS L
Sbjct: 706 LSHISSRNVSISVPTVLQDVFSDSPL 731


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -1

Query: 273 PRWTCGNGCSLLHYCVRTPYHFVCCSSL 190
           P  T    C  L +C+   YH   CSSL
Sbjct: 28  PLVTVPRQCICLRWCISKEYHEFTCSSL 55


>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
           S7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 73  LFECSSNGPETEEMPRFVEAVRRKNIGKF 159
           LF C+S+G   +E   F+   R   +GKF
Sbjct: 9   LFRCASSGHLMKESLVFIHQTRTFQVGKF 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,631
Number of Sequences: 5004
Number of extensions: 69127
Number of successful extensions: 182
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)