Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0706
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0316 + 3479574-3482679,3482766-3483127                           29   2.7  
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    29   4.7  
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591...    29   4.7  

>10_01_0316 + 3479574-3482679,3482766-3483127
          Length = 1155

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 446 FQQDSAPAHRAKSTQDWLAARKSTSSGTKTGPPP 547
           F     PA +      W  +R S+SSG  T PPP
Sbjct: 45  FLDSLPPASQRLLLPSWRQSRSSSSSGNATAPPP 78


>10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490,
            20164566-20166466,20166557-20166650,20166953-20167440,
            20167919-20168599,20168870-20168944,20170148-20170210,
            20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 519  HPARRLALLQSRFESVRLQDMGNTLRKKACSKPHPNLESLKTSLIKAAADI 671
            H  R L L+ +   +VRL  +G T+++K C     ++ ++   L+    ++
Sbjct: 1353 HCVRLLLLVSTDLLAVRLSGIGRTVKEKVCVHTSRDIRAIARQLVSVWVEV 1403


>04_04_0671 -
           27157692-27158620,27158711-27158828,27158967-27159156,
           27159281-27159415,27159537-27159634,27160034-27160206,
           27160299-27160772,27161464-27161518
          Length = 723

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 238 KKRATVSACPTRSFSILAHGMVGSFLLGLNRGTF 339
           ++   +  C    ++I   G  GSFLLGLN+ T+
Sbjct: 158 QENTVIQTCAVACYTIGYGGGFGSFLLGLNKKTY 191


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,543,394
Number of Sequences: 37544
Number of extensions: 440900
Number of successful extensions: 1054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)