Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0706
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.024
SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 30 2.1
SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31) 30 2.1
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2) 29 2.8
SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033) 29 2.8
SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6) 29 2.8
SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9) 29 3.6
SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20) 28 6.4
SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83) 28 8.4
>SB_59204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 36.3 bits (80), Expect = 0.024
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 428 NNRHWVFQQDSAPAHRAKSTQDW 496
N R +F QD APAH AK++QDW
Sbjct: 162 NKRSMLFVQDGAPAHTAKASQDW 184
>SB_21757| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 254
Score = 29.9 bits (64), Expect = 2.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 84 EWAQHSPDLNPPDFYLWGFL 103
>SB_11746| Best HMM Match : RVT_1 (HMM E-Value=5e-31)
Length = 323
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = +3
Query: 156 ILFSDEKIFTVEESYNKQNDKVYAH-SSEEASNRFRMSNEVIFHP 287
IL++DE ++E + N + KVY ++ + + + SN VIFHP
Sbjct: 183 ILYADESGKSIETTVNNELFKVYNWLTANKLTLNIKKSNFVIFHP 227
>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
Length = 615
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 308 EWAPHSPDLNPPDFYLWGFL 327
>SB_25957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 514 DFIRHEDWPSSSPDLNPLDYKIWATL*GKRRAQSLIP 624
DF+R D SSPDL L +K W+ + +L+P
Sbjct: 48 DFLRSPDLGISSPDLENLVWKEWSDVNKSMTPMNLVP 84
>SB_49613| Best HMM Match : Transposase_5 (HMM E-Value=0.033)
Length = 999
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 693 EWAPHSPDLNPPDFYLWGFL 712
>SB_42850| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 474
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 84 EWAPHSPDLNPPDFYLWGFL 103
>SB_30859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 84 EWAPHSPDLNPPDFYLWGFL 103
>SB_16626| Best HMM Match : DUF1257 (HMM E-Value=3.6)
Length = 267
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 32 EWAPHSPDLNPPDFYLWGFL 51
>SB_1045| Best HMM Match : Hormone_3 (HMM E-Value=3.9)
Length = 153
Score = 29.1 bits (62), Expect = 3.6
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 532 DWPSSSPDLNPLDYKIWATL 591
+W SPDLNP D+ +W L
Sbjct: 84 EWVPHSPDLNPPDFYLWGFL 103
>SB_18255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1457
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 191 FYGKNFLIRKKNFPIFFRRTASTKRGISSVSGPLDEHS 78
F+ K RK+ F + RRT S KR S P+ EHS
Sbjct: 1273 FFRKRTFSRKQTFSL--RRTFSRKRTFSREHSPVSEHS 1308
>SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 684
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/49 (22%), Positives = 24/49 (48%)
Frame = +2
Query: 350 GVKTNAVVYQNTVLTNLVEPVSHTMFNNRHWVFQQDSAPAHRAKSTQDW 496
G +A VY++ + N ++PV+HT + ++ +P +T +
Sbjct: 565 GALNSAAVYKDPITMNTIDPVTHTNSASSDVTYKNHGSPYDEVTATSTY 613
>SB_12190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 740
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 19 KGVK*RLRASGISKKNRTLFECSSNGPETEEMPRFVEAVRRKNIGK 156
K +K RLR+S + + L + NGP T E +E V R+ + K
Sbjct: 606 KRLKTRLRSSMKNDMLQALMHVTINGPSTSECKPIIEEVTRQWLAK 651
>SB_2332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1111
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 19 KGVK*RLRASGISKKNRTLFECSSNGPETEEMPRFVEAVRRKNIGK 156
K +K RLR+S + + L + NGP T E +E V R+ + K
Sbjct: 977 KRLKTRLRSSMKNDMLQALMHVTINGPSTSECKPIIEEVTRQWLAK 1022
>SB_18820| Best HMM Match : FCH (HMM E-Value=5.4e-20)
Length = 477
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 138 AKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEVIFHPRSWYG 302
AKK+ E++ + + ++EE++ D+ + +S R + N+V+ + W G
Sbjct: 66 AKKWEEVIKAGSEYGSMEEAFKGAVDEANSRASVHTQCRDDLLNDVVELVKKWKG 120
>SB_5284| Best HMM Match : CHASE3 (HMM E-Value=0.83)
Length = 957
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/48 (25%), Positives = 28/48 (58%)
Frame = +3
Query: 135 TAKKYREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEVI 278
T +KY +I+ + I+ +++++NK+ +++A E + + NE I
Sbjct: 211 TQQKYNQIVLLQDAIYRIKQAFNKEFSEMFALKEGEL-KKIQEKNERI 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,473,957
Number of Sequences: 59808
Number of extensions: 514234
Number of successful extensions: 1342
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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