Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0706
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical ...    62   4e-10
U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical pr...    39   0.004
AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical ...    39   0.004
AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormo...    39   0.004
AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm rece...    38   0.007
X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein ( Caeno...    33   0.20 
U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical pr...    33   0.20 
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    33   0.20 
AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical ...    33   0.20 
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    33   0.20 
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    33   0.20 
AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical ...    33   0.20 
U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical pr...    31   0.80 
Z19555-2|CAA79619.2|  394|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer ...    27   9.8  
U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.        27   9.8  
U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva dev...    27   9.8  

>AF098501-8|AAC67403.1|  459|Caenorhabditis elegans Hypothetical
           protein H28G03.4 protein.
          Length = 459

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 32/83 (38%), Positives = 44/83 (53%)
 Frame = +2

Query: 248 QPFPHVQRGHFPSSLMVWLGVSYWGLTEVHFCE*GVKTNAVVYQNTVLTNLVEPVSHTMF 427
           QP   VQR  +P  +MV+ G++  G T + F   G+K N   Y + + T L+ P     F
Sbjct: 242 QPNSRVQRTGYPKGIMVFAGITANGKTPLIFVPQGIKVNGNNYLDMLKTELM-PWVKKHF 300

Query: 428 NNRHWVFQQDSAPAHRAKSTQDW 496
               W FQQD APAH+ K+ Q W
Sbjct: 301 KKTKWTFQQDGAPAHKHKNVQAW 323



 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 17/29 (58%), Positives = 20/29 (68%)
 Frame = +1

Query: 514 DFIRHEDWPSSSPDLNPLDYKIWATL*GK 600
           DFI    WP SSPDLNP+DY +W+ L  K
Sbjct: 330 DFIAFNQWPPSSPDLNPMDYSVWSVLEAK 358



 Score = 45.6 bits (103), Expect = 3e-05
 Identities = 17/27 (62%), Positives = 25/27 (92%)
 Frame = +3

Query: 147 YREILFSDEKIFTVEESYNKQNDKVYA 227
           +R++LF+DEKIF +E+S+N QND+VYA
Sbjct: 213 HRKVLFTDEKIFCIEQSFNTQNDRVYA 239



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = +3

Query: 585 NTLRKKACSKPHPNLESLKTSLIKAAADIDMD 680
           + L  KACSKPH N++SLK SL KA  ++D++
Sbjct: 353 SVLEAKACSKPHRNIDSLKDSLKKAWDELDIN 384


>U23174-5|AAC46711.1|  329|Caenorhabditis elegans Hypothetical
           protein R10H1.3 protein.
          Length = 329

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = +2

Query: 245 EQPFPHVQRGHFPSSLMVWLGVSYWGLTEVHFCE*GVKTNAVVYQNTVLTNLVEPVSHTM 424
           ++P    +R     ++MVW   +     E+ F     K N+  YQN +   L + + H  
Sbjct: 165 KEPMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVS--SKMNSTDYQNVLELELSKYLRH-- 220

Query: 425 FNNRHWVFQQDSAPAHRAKSTQDWLAARK 511
           ++ + + FQQD+A  H + ST+D+   +K
Sbjct: 221 YSRKDFRFQQDNATIHVSNSTRDYFKLKK 249



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWP+ SPDLNP++  +W  L
Sbjct: 254 DWPARSPDLNPIE-NLWGIL 272


>AF106576-3|AAK68401.1|  329|Caenorhabditis elegans Hypothetical
           protein W07E6.6 protein.
          Length = 329

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = +2

Query: 245 EQPFPHVQRGHFPSSLMVWLGVSYWGLTEVHFCE*GVKTNAVVYQNTVLTNLVEPVSHTM 424
           ++P    +R     ++MVW   +     E+ F     K N+  YQN +   L + + H  
Sbjct: 165 KEPMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVS--SKMNSTDYQNVLELELSKYLRH-- 220

Query: 425 FNNRHWVFQQDSAPAHRAKSTQDWLAARK 511
           ++ + + FQQD+A  H + ST+D+   +K
Sbjct: 221 YSRKDFRFQQDNATIHVSNSTRDYFKLKK 249



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWP+ SPDLNP++  +W  L
Sbjct: 254 DWPARSPDLNPIE-NLWGIL 272


>AC006671-2|AAO21381.1|  459|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 88, isoform b protein.
          Length = 459

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 24/89 (26%), Positives = 44/89 (49%)
 Frame = +2

Query: 245 EQPFPHVQRGHFPSSLMVWLGVSYWGLTEVHFCE*GVKTNAVVYQNTVLTNLVEPVSHTM 424
           ++P    +R     ++MVW   +     E+ F     K N+  YQN +   L + + H  
Sbjct: 295 KEPMVFSRRNFGGGTVMVWGAFTEKKKLEIQFVS--SKMNSTDYQNVLELELSKYLRH-- 350

Query: 425 FNNRHWVFQQDSAPAHRAKSTQDWLAARK 511
           ++ + + FQQD+A  H + ST+D+   +K
Sbjct: 351 YSRKDFRFQQDNATIHVSNSTRDYFKLKK 379



 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWP+ SPDLNP++  +W  L
Sbjct: 384 DWPARSPDLNPIE-NLWGIL 402


>AF101318-3|AAK68598.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 69 protein.
          Length = 336

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/75 (26%), Positives = 32/75 (42%)
 Frame = -2

Query: 269 VGHAETVARFFTTVCVHLIILFVVALFYGKNFLIRKKNFPIFFRRTASTKRGISSVSGPL 90
           + H  T+  FF +   +LI++F+ A FY KN     K   I+F         +   + P 
Sbjct: 9   LSHVFTIVEFFASTFTNLILIFLTA-FYVKNLFGTYKRMVIYFSTLGIVFSALEITAKPF 67

Query: 89  DEHSNNVLFFFDMPE 45
             + N  L +F   E
Sbjct: 68  SHNYNGSLLYFSTSE 82


>X01005-1|CAA25498.1|  273|Caenorhabditis elegans protein (
           Caenorhabditis eleganstransposable element Tc1. ).
          Length = 273

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 200 DWPSQSPDLNPIEH-LWEEL 218


>U39743-1|AAA80436.2|  314|Caenorhabditis elegans Hypothetical
           protein R173.2 protein.
          Length = 314

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 241 DWPSQSPDLNPIEH-LWEEL 259


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 270 DWPSQSPDLNPIEH-LWEEL 288


>AF125450-4|AAD12818.1|  343|Caenorhabditis elegans Hypothetical
           protein Y39F10A.4 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 270 DWPSQSPDLNPIEH-LWEKL 288


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 200 DWPSQSPDLNPIEH-LWEEL 218


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 200 DWPSQSPDLNPIEH-LWEEL 218


>AF016682-7|AAB66191.2|  343|Caenorhabditis elegans Hypothetical
           protein T07D3.8 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWPS SPDLNP+++ +W  L
Sbjct: 270 DWPSQSPDLNPIEH-LWEEL 288


>U49941-9|AAB53871.1|  141|Caenorhabditis elegans Hypothetical
           protein K10B3.2 protein.
          Length = 141

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 532 DWPSSSPDLNPLDYKIWATL 591
           DWP+ SPDLNP++  +W  L
Sbjct: 66  DWPARSPDLNPIE-NLWGIL 84


>Z19555-2|CAA79619.2|  394|Caenorhabditis elegans Hypothetical
           protein F02A9.4b protein.
          Length = 394

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = -2

Query: 200 VALFYGKNFLIRKKNFPIFFRRTASTKRGISSVSGPLDEHSNNVLFFFDMPEALSLHLTP 21
           +A   G + L+R K FPI    +A   R ++ V    DE   N++  F +P+ + +    
Sbjct: 158 IASHLGIDHLVRTKEFPISQESSADAFRALAGVFS--DEKVKNLVIDFIVPQLVDIDFAD 215

Query: 20  FSP 12
             P
Sbjct: 216 IYP 218


>U88175-4|AAB42279.1|  440|Caenorhabditis elegans Hypothetical
           protein F21F3.2 protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 458 SAPAHRAKSTQDWLAARKSTSSGTKTGPPPVQ 553
           SAP  R++S +    A+KST       PPP Q
Sbjct: 406 SAPGKRSESNKTAAIAKKSTMKSVMNAPPPRQ 437


>U80953-3|AAB52554.1|  350|Caenorhabditis elegans Abnormal dauer
           formation protein 7 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 YREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEV 275
           YR++L  DE+   VE S+    D  Y  +  +   +F ++N++
Sbjct: 74  YRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDL 116


>U72884-1|AAC47389.1|  350|Caenorhabditis elegans DAF-7 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 YREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEV 275
           YR++L  DE+   VE S+    D  Y  +  +   +F ++N++
Sbjct: 74  YRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDL 116


>U72883-1|AAC47390.1|  350|Caenorhabditis elegans dauer larva
           development regulatorygrowth factor protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 147 YREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEV 275
           YR++L  DE+   VE S+    D  Y  +  +   +F ++N++
Sbjct: 74  YRDLLEKDEQDMGVEMSFYTAKDPSYGENPSQLVAKFDVTNDL 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,632
Number of Sequences: 27780
Number of extensions: 387097
Number of successful extensions: 1093
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)