Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0706
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53550.1 68418.m06654 transporter, putative similar to iron-p...    31   0.56 
At1g43770.1 68414.m05040 PHD finger family protein contains Pfam...    29   2.3  
At2g27660.1 68415.m03352 DC1 domain-containing protein contains ...    29   3.0  
At5g22570.1 68418.m02636 WRKY family transcription factor contai...    28   5.2  
At1g54200.1 68414.m06178 expressed protein                             28   5.2  
At5g18480.1 68418.m02179 glycogenin glucosyltransferase (glycoge...    27   9.1  

>At5g53550.1 68418.m06654 transporter, putative similar to
           iron-phytosiderophore transporter protein yellow stripe
           1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
           OPT oligopeptide transporter protein
          Length = 669

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 238 KKRATVSACPTRSFSILAHGMVGSFLLGLNRGTF 339
           ++   V  C    +SI   G  GS+LLGLNR T+
Sbjct: 106 QENTVVQTCAVACYSIAVGGGFGSYLLGLNRITY 139


>At1g43770.1 68414.m05040 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 371

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -2

Query: 542 EGQSSCRMKSIYAPLASLVCFSLYELAPNLVGIPSA 435
           +G +SC M  I A ++SL C  ++E A +L G  SA
Sbjct: 300 KGGNSCTMDGIVAHVSSLACPKVHETASSLKGRLSA 335


>At2g27660.1 68415.m03352 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 718

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 141 KKYREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRF 257
           + Y +I    E ++   ESY   ND  Y+  +EE +N++
Sbjct: 550 ESYSDITGGSESMYEDGESYGTMNDSQYSGFNEEPNNQY 588


>At5g22570.1 68418.m02636 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 289

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 144 KYREILFSDEKIFTVEESYNKQNDKVYAHSSEEASNRFRMSNEVIF-HPRSW 296
           +YREI  +D+    V E Y       Y  SS   S     +++++F +P SW
Sbjct: 230 QYREITSNDQDCQDVIEEYLSSPSGSYPPSSSSGSESADFNSDLLFDNPDSW 281


>At1g54200.1 68414.m06178 expressed protein
          Length = 366

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 129 SGTAKKYREILFSDEKIFTVEES--YNKQNDKVYAHSSEE-ASNRFRMSNEVI 278
           S + K  R + F    +   E+S  YN +N+KVY ++  E  S R  + N V+
Sbjct: 232 SSSEKSKRSVRFCPVNVIFDEDSSKYNNKNNKVYGNNEREYESIRHTLENRVM 284


>At5g18480.1 68418.m02179 glycogenin glucosyltransferase
           (glycogenin)-related low similarity to glycogenin-1 from
           Mus musculus [SP|Q9R062], Rattus norvegicus [SP|O08730],
           Homo sapiens [SP|P46976]; contains Pfam profile PF01501:
           Glycosyl transferase family 8
          Length = 537

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -2

Query: 200 VALFYGKNFLIRKKNFPIFFRRTASTKRGISSVSGPLDEHSNNVL 66
           V L YG  FL+  +      R T STK  ++ VS  + ++S  +L
Sbjct: 34  VTLLYGDEFLLGVRVLGKSIRDTGSTKDMVALVSDGVSDYSKKLL 78


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,317
Number of Sequences: 28952
Number of extensions: 357397
Number of successful extensions: 918
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)