Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0705
         (662 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   6.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 357 LSRYTVVNHLKTLENRRTNTSNYSALEV 440
           L R+T+        N +TNT  YS L+V
Sbjct: 206 LPRFTLEKFFTDYCNSKTNTGEYSCLKV 233


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 357 LSRYTVVNHLKTLENRRTNTSNYSALEV 440
           L R+T+        N +TNT  YS L+V
Sbjct: 206 LPRFTLEKFFTDYCNSKTNTGEYSCLKV 233


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 348 FKTLSRYTVVNH-LKTLENRRTNTSNYSALEVRNNEVFFS 464
           F+ ++R +V N   K  ++R   +++  A+  RN+E+F S
Sbjct: 680 FQDVARRSVANSPTKNADSREYRSNSMGAVMTRNSEMFSS 719


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 250 LRGVRYQCFTTKSVSQHVQKQRNMLITYLSIAFSKL 357
           LRG+    F  +  +  +Q QRN LI Y++    +L
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQRNQLIQYVATLEKRL 350


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
 Frame = +3

Query: 393 LENRRTNTSNYSAL---EVRNNE 452
           LEN R N SNY+ L   ++R NE
Sbjct: 13  LENWRVNNSNYTELLPIDMRFNE 35


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 232 HERVLSLRGVRYQCFTTKSVSQHVQKQRNMLITYLSIAFSKLYLVILSST 381
           HE++L  +  +      KS+  +  K+R+  +    +AF+  +L +L+ T
Sbjct: 250 HEKMLREQAKK---MNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWT 296


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +1

Query: 232 HERVLSLRGVRYQCFTTKSVSQHVQKQRNMLITYLSIAFSKLYLVILSST 381
           HE++L  +  +      KS+  +  K+R+  +    +AF+  +L +L+ T
Sbjct: 250 HEKMLREQAKK---MNVKSLVSNQDKERSAEVRIAKVAFTIFFLFLLAWT 296


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 181 LHKSTNIWC*MNGLFGRHERVLSLR 255
           +H S+N    M+ +F   ERV SLR
Sbjct: 307 IHNSSNARFLMDSMFDFAERVNSLR 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,442
Number of Sequences: 438
Number of extensions: 3740
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)