Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0704
(703 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-... 163 5e-39
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther... 74 4e-12
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re... 63 6e-09
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct... 63 7e-09
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr... 54 4e-06
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct... 50 7e-05
UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein; ... 47 4e-04
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile... 47 5e-04
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr... 45 0.002
UniRef50_UPI0000E4756E Cluster: PREDICTED: similar to endonuclea... 40 0.078
UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-direct... 40 0.078
UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:... 40 0.078
UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2... 37 0.42
UniRef50_Q1ZBP6 Cluster: Putative uncharacterized protein; n=1; ... 34 2.9
UniRef50_UPI0000F1E597 Cluster: PREDICTED: hypothetical protein;... 33 6.8
UniRef50_UPI0000E46F21 Cluster: PREDICTED: similar to endonuclea... 33 6.8
UniRef50_Q481U2 Cluster: Putative lipoprotein; n=3; Gammaproteob... 33 6.8
UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to endonuclea... 33 9.0
UniRef50_Q4QQE0 Cluster: Endonuclease-reverse transcriptase; n=1... 33 9.0
UniRef50_Q4QA15 Cluster: Putative uncharacterized protein; n=3; ... 33 9.0
>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
protein; n=9; cellular organisms|Rep: Endonuclease and
reverse transcriptase-like protein - Bombyx mori (Silk
moth)
Length = 960
Score = 163 bits (395), Expect = 5e-39
Identities = 76/83 (91%), Positives = 77/83 (92%)
Frame = -3
Query: 251 SIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHSRRPRXVLTDPSDPITFA 72
SIRK+MKS SERYFDKAMRHDNRLIVAAADYSPNPDHAGASH RRPR VLTDPSDPIT A
Sbjct: 871 SIRKHMKSVSERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDPITLA 930
Query: 71 LDAFSSNTRSRLRDPGNRTRRTR 3
LD FSSNTRSRLR PGNRTRRTR
Sbjct: 931 LDTFSSNTRSRLRSPGNRTRRTR 953
Score = 124 bits (300), Expect = 2e-27
Identities = 58/63 (92%), Positives = 59/63 (93%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
LRNKVTLYKTCIRPVMTYASVV AHA+R IDTLQSLQSRFCRLAVGAPWFVRNVDLHDD
Sbjct: 807 LRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 866
Query: 262 LXL 254
L L
Sbjct: 867 LGL 869
Score = 70.1 bits (164), Expect = 5e-11
Identities = 41/83 (49%), Positives = 45/83 (54%)
Frame = -2
Query: 690 KMTAVLFQXXXXXXXXXXXXXRNLTPRITFFRQPIPWAQEGQVPGRYPGCIDDIPPAYKI 511
K TAVLFQ RN+TP IT F PIPWA++ + G P K
Sbjct: 724 KSTAVLFQRGNSPLISSRIRRRNITPPITLFGLPIPWARKVKYLGVTLDASMTFRPHIKT 783
Query: 510 SRDRAAFILDRLYPWICKPSKMS 442
RDRAAFIL RLYP ICK SKMS
Sbjct: 784 VRDRAAFILGRLYPMICKRSKMS 806
Score = 52.4 bits (120), Expect = 1e-05
Identities = 32/64 (50%), Positives = 37/64 (57%)
Frame = -3
Query: 701 NPSKK*LRCYFRGEAPHGFPPGLGGGISHPGLLSLDNPYPGPRKVKYLGVTLDASMTFRP 522
NP+K + RG +P I+ P L P P RKVKYLGVTLDASMTFRP
Sbjct: 721 NPAKSTAVLFQRGNSPLISSRIRRRNITPPITL-FGLPIPWARKVKYLGVTLDASMTFRP 779
Query: 521 HIKS 510
HIK+
Sbjct: 780 HIKT 783
>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
mylitta|Rep: Reverse transcriptase-like - Antheraea
mylitta (Tasar silkworm)
Length = 186
Score = 73.7 bits (173), Expect = 4e-12
Identities = 32/63 (50%), Positives = 42/63 (66%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
LR+K+ LYKTCIRPV+TY+ V AH S+ LQ Q+R R G PW++R VDLH +
Sbjct: 18 LRHKLILYKTCIRPVITYSCPVFAHMSKDNFHKLQVFQNRVLRKVTGTPWYIRRVDLHRN 77
Query: 262 LXL 254
L +
Sbjct: 78 LEI 80
Score = 56.8 bits (131), Expect = 5e-07
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = -3
Query: 251 SIRKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHSRRPRXVLTDPSDPITFA 72
SI Y+KS + YF+KA H + L+V+AA+Y P P+ A RRPR + DP D IT
Sbjct: 82 SIWTYVKSLTISYFEKAANHPSPLVVSAANYQPVPN--AARPRRRPRHIFIDPPDEITAV 139
Query: 71 LDAFS----SNTRSRLRDPGNRTRR 9
D + + SR R +R+RR
Sbjct: 140 NDQYQPVSPNRACSRPRPRNHRSRR 164
>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
GH03753p - Drosophila melanogaster (Fruit fly)
Length = 888
Score = 63.3 bits (147), Expect = 6e-09
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L K LY + ++P+ TY S + +ASR ID +Q QSR R+ GAPW++RN ++H D
Sbjct: 779 LEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRD 838
Query: 262 LXL 254
L +
Sbjct: 839 LKI 841
>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 1336
Score = 62.9 bits (146), Expect = 7e-09
Identities = 31/62 (50%), Positives = 41/62 (66%), Gaps = 1/62 (1%)
Frame = -1
Query: 436 NKVTLYKTCIRPVMTYASVVIAHAS-RXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDL 260
NK+ LYK+ IRP MTYASV A A + + LQ+ Q++F R A APWFVRN LH ++
Sbjct: 1262 NKLLLYKSVIRPTMTYASVAWAFAPCKTRMHKLQTFQNKFLRQAFNAPWFVRNNQLHREV 1321
Query: 259 XL 254
+
Sbjct: 1322 KM 1323
>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
transposon X-element; n=1; Drosophila melanogaster|Rep:
Probable RNA-directed DNA polymerase from transposon
X-element - Drosophila melanogaster (Fruit fly)
Length = 908
Score = 53.6 bits (123), Expect = 4e-06
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L NK+T+YK + P Y + A I +Q++Q++ RL G WFVRN LH D
Sbjct: 788 LSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRD 847
Query: 262 LXL-NQFG--NT*SQRRNDTSIR---LCVMIIALSLPP----LTTPRILITQEPVT 125
L L F N S R +D R + S PP PR LIT+ P+T
Sbjct: 848 LKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLT 903
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 590 PYPGPRKVKYLGVTLDASMTFRPHI 516
P P P KYLGV LD +TF H+
Sbjct: 738 PVPQPNAAKYLGVLLDRRLTFSKHV 762
>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 494
Score = 49.6 bits (113), Expect = 7e-05
Identities = 22/63 (34%), Positives = 37/63 (58%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L NK LY + +RP+++YAS A+ + + ++Q++ R APWF+RN +L D
Sbjct: 383 LANKRLLYLSTLRPILSYASPCWGSAASSNLSHILTVQNKIIRQISNAPWFIRNKNLEKD 442
Query: 262 LXL 254
L +
Sbjct: 443 LKI 445
>UniRef50_Q07995 Cluster: Reverse transcriptase homolog protein;
n=80; Culicimorpha|Rep: Reverse transcriptase homolog
protein - Chironomus thummi
Length = 883
Score = 47.2 bits (107), Expect = 4e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
+RNK+ +YK IRP+ TY ++ + LQ LQ++F R+ + + R DLH +
Sbjct: 796 VRNKLLIYKLAIRPIFTYGCSAFGSMAKTHLQKLQVLQNKFLRIVLNKTRYERITDLHTE 855
>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
polymerase from mobile element jockey - Drosophila
melanogaster (Fruit fly)
Length = 916
Score = 46.8 bits (106), Expect = 5e-04
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLXL 254
KV +YK+ + P + Y V A++ ++ ++ LQ++ R GAPW++R D+ DL +
Sbjct: 796 KVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKV 855
Query: 253 NQFGN 239
+ G+
Sbjct: 856 PKLGD 860
>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
transposon BS; n=7; melanogaster subgroup|Rep: Probable
RNA-directed DNA polymerase from transposon BS -
Drosophila melanogaster (Fruit fly)
Length = 906
Score = 44.8 bits (101), Expect = 0.002
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
LR K +Y C+ P+ Y + A++ + +Q LQ+R R P++VR LH D
Sbjct: 794 LRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRD 853
Query: 262 LXLNQFGNT*SQRRNDTSIRL 200
L L+ S+ + S RL
Sbjct: 854 LNLHTVEEQISRHTSRYSDRL 874
Score = 35.9 bits (79), Expect = 0.96
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 578 PRKVKYLGVTLDASMTFRPHIKS 510
P + KYLG+TLD +TF PH+K+
Sbjct: 748 PSQAKYLGITLDKRLTFGPHLKA 770
>UniRef50_UPI0000E4756E Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 293
Score = 39.5 bits (88), Expect = 0.078
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAV 305
LR KV YKT + PV+ YA+VV ++ I L+ +Q R+ R A+
Sbjct: 215 LRTKVLCYKTLVLPVLEYAAVVWDPFTQKNITRLEKIQRRYARFAL 260
>UniRef50_UPI0000D5784F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 421
Score = 39.5 bits (88), Expect = 0.078
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -1
Query: 436 NKVTLYKTCIRPVMTYASVVIAHAS-RXXIDTLQSLQSRFCRLA 308
NK+ LYK+ IRP MTYA V A A + + LQ+ Q++F R A
Sbjct: 353 NKLLLYKSVIRPTMTYAPVAWAFAPYKTRMHKLQTFQNKFLRQA 396
>UniRef50_Q8I7P8 Cluster: ORF1; n=2; Drosophila melanogaster|Rep:
ORF1 - Drosophila melanogaster (Fruit fly)
Length = 884
Score = 39.5 bits (88), Expect = 0.078
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLH 269
+ NK+ ++KT P++ Y S V ++ I LQ Q++ +L + P++ LH
Sbjct: 813 ISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLH 870
>UniRef50_Q4QQE6 Cluster: Endonuclease-reverse transcriptase; n=2;
Schistosoma|Rep: Endonuclease-reverse transcriptase -
Schistosoma mansoni (Blood fluke)
Length = 831
Score = 37.1 bits (82), Expect = 0.42
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGA 299
K+TLYK C+RP + Y S + ++ + ++ +Q RF R +G+
Sbjct: 765 KLTLYKICVRPSLEYCSFIFSNMNTTDKIRVEDVQRRFTRQLLGS 809
>UniRef50_Q1ZBP6 Cluster: Putative uncharacterized protein; n=1;
Psychromonas sp. CNPT3|Rep: Putative uncharacterized
protein - Psychromonas sp. CNPT3
Length = 776
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -1
Query: 424 LYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDL 272
LYKT + V+ Y S+ AS I L+ +Q R RLA+G+ N+ L
Sbjct: 464 LYKTTVLSVLEYGSICFHWASNTQILKLERIQYRGLRLALGSMKSTHNMSL 514
>UniRef50_UPI0000F1E597 Cluster: PREDICTED: hypothetical protein;
n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
Danio rerio
Length = 620
Score = 33.1 bits (72), Expect = 6.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 452 VKCPSEQGDTLQNLHKARHDLRECGDC 372
+ C S G T +N+HK RH L EC C
Sbjct: 398 IPCESLSGMTSENVHKHRHRLEECTPC 424
>UniRef50_UPI0000E46F21 Cluster: PREDICTED: similar to
endonuclease-reverse transcriptase; n=2;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease-reverse transcriptase - Strongylocentrotus
purpuratus
Length = 561
Score = 33.1 bits (72), Expect = 6.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -1
Query: 439 RNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRL 311
++ V LYKT +RP + Y S V H D L+ +Q R +L
Sbjct: 423 KSLVLLYKTLVRPKLEYCSTVWNHLLNKDKDKLEKVQRRATKL 465
>UniRef50_Q481U2 Cluster: Putative lipoprotein; n=3;
Gammaproteobacteria|Rep: Putative lipoprotein -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 341
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 484 ENKRGTVTADFICGRNVIDASRVTPRYLTFLGPGYGLSKE 603
ENK GTVT F CG N ++ TF YGLS++
Sbjct: 289 ENKDGTVTVSFNCGDNAVNNIDTKGTDFTFTMRYYGLSQK 328
>UniRef50_UPI0000587F4D Cluster: PREDICTED: similar to
endonuclease/reverse transcriptase; n=1;
Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
endonuclease/reverse transcriptase - Strongylocentrotus
purpuratus
Length = 405
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCR 314
KV Y T ++P+M YAS++ ++ I L+ +Q R+ R
Sbjct: 253 KVLCYNTLLQPIMEYASIIWDPHTQANIKKLEMVQRRYVR 292
>UniRef50_Q4QQE0 Cluster: Endonuclease-reverse transcriptase; n=1;
Schistosoma mansoni|Rep: Endonuclease-reverse
transcriptase - Schistosoma mansoni (Blood fluke)
Length = 1067
Score = 32.7 bits (71), Expect = 9.0
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCR 314
K+ LYK C+RP++ Y S + ++ I ++ +Q F R
Sbjct: 892 KIILYKACVRPIVEYCSFLSSNLRLSDILKVEGIQRDFTR 931
>UniRef50_Q4QA15 Cluster: Putative uncharacterized protein; n=3;
Leishmania|Rep: Putative uncharacterized protein -
Leishmania major
Length = 1032
Score = 32.7 bits (71), Expect = 9.0
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 176 VAAADYSPNPDHAGAS-HSRRPRXVLTDPSDPI 81
+AAA P+P A A+ HSR+P+ +T PS P+
Sbjct: 223 IAAAAQQPSPTTASAAVHSRKPQRGITPPSSPL 255
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 661,429,909
Number of Sequences: 1657284
Number of extensions: 13067174
Number of successful extensions: 33415
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 31967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33390
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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