Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    25   0.79 
DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory pro...    24   1.4  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   9.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   9.7  

>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 72  CKGYWI*WIRKDVSRASTVTGSCVI 146
           CKG++   +RKD+S A     +C+I
Sbjct: 106 CKGFFKRTVRKDLSYACREEKNCII 130


>DQ855488-1|ABH88175.1|  112|Tribolium castaneum chemosensory
           protein 1 protein.
          Length = 112

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = +1

Query: 409 CKFCKVSPCSEGHFTRLTDPGVESIENKRGTVTADFIC 522
           C    +  C +   TR++D  +ES  N R  +     C
Sbjct: 14  CLLAAIFTCVKPQLTRISDEAIESTLNDRRYLLRQLKC 51


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 425 TLQNLHKARHDLRECGDCSRXPXXHRH 345
           TL+N+ K   DL E G        +RH
Sbjct: 101 TLENMTKIDKDLTELGQKKYLEKRNRH 127


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 425 TLQNLHKARHDLRECGDCSRXPXXHRH 345
           TL+N+ K   DL E G        +RH
Sbjct: 101 TLENMTKIDKDLTELGQKKYLEKRNRH 127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,683
Number of Sequences: 336
Number of extensions: 3165
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)