Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   3.4  
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.9  

>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 172 PPLTTPRILITQEPVTVDALXTSLRIHQIQ*PLH*TP 62
           PP+ +PR     +PV V+A+  S  +   Q PLH +P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 211

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 248 IRKYMKSASERYFDKAMRHDNRLI 177
           IRKY+++  E  FDK  +  ++LI
Sbjct: 98  IRKYLETIEENEFDKVRKSSDKLI 121


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = -1

Query: 427 TLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQS----RFCRLAVGAPWFVRNVDLHDDL 260
           T  ++ I+    Y+  ++  A    I+++Q L      R+CR  + A W+   + L+  L
Sbjct: 288 TELQSLIKKYSFYSERLVKSADNFTIESIQCLLILSIYRYCRTEISAAWYYMKLGLNCCL 347

Query: 259 XLNQFGN 239
            L    N
Sbjct: 348 RLGLHRN 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,615,981
Number of Sequences: 5004
Number of extensions: 49516
Number of successful extensions: 139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)