Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0116 + 4420808-4421323,4421367-4421918                           33   0.17 
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349...    28   6.2  

>09_02_0116 + 4420808-4421323,4421367-4421918
          Length = 355

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 34/104 (32%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
 Frame = -3

Query: 644 PPGLGGGISHPGLLSLDNPYPGPRKVKYLGVTLDASMTFRPHIKSAVTVPRLFSIDSTPG 465
           PP L G   HP       P P PR       TL     F+P I +A + PR  S+D  P 
Sbjct: 29  PPPLLGHFHHPA------PVP-PRGCPPRPHTLLTVPAFQPLITAASSSPRRLSLDFVPD 81

Query: 464 SVSRVKCPSEQGDTLQNLHKARHD-LRECGDCSRXPXXHRHPPI 336
               V   S  G  L   H+ RHD    C   SR       PP+
Sbjct: 82  LSHFVLLYSHLGLLLLR-HRERHDAFLVCDPVSRRHVLFHPPPV 124


>03_05_0626 +
           26233178-26233233,26234083-26234284,26234800-26234968,
           26235767-26238768
          Length = 1142

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 155 PNPDHAGASHSRRPRXVLTDPS--DPITFA 72
           P PDHA   HS   R  L+ PS  DP+  A
Sbjct: 836 PKPDHASKVHSEGTRSTLSRPSFTDPLVTA 865


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,389,724
Number of Sequences: 37544
Number of extensions: 380980
Number of successful extensions: 956
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)