Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ926321-1|ABK81537.1|  126|Homo sapiens immunoglobulin heavy ch...    30   9.2  
BC038799-1|AAH38799.1|  745|Homo sapiens PCDH21 protein protein.       30   9.2  
AB053448-1|BAB61905.1|  858|Homo sapiens KIAA1775 protein protein.     30   9.2  

>DQ926321-1|ABK81537.1|  126|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 126

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
 Frame = +1

Query: 415 FCKVSPCSEGHFTRLTDPGVESI----ENKRGTVTADFICGRNVIDASRVTPRYLTFLGP 582
           F   +P   GH T   DP + +      + + + TA + C R  +  +     Y  F GP
Sbjct: 57  FTNYNPSFRGHVTMSADPSISAAYLQWTSLKASDTAMYFCARLALSGADRPEDYFDFWGP 116

Query: 583 G 585
           G
Sbjct: 117 G 117


>BC038799-1|AAH38799.1|  745|Homo sapiens PCDH21 protein protein.
          Length = 745

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -3

Query: 659 APHGFPPGLGGGISHPGLLSLDNPYPGPRKVKYLGVTLDASMTFRPHIKSAVTVPRLFSI 480
           APH F  G+G    +  L SL    P    V  L  T         HI    +   +FS+
Sbjct: 24  APHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSV 83

Query: 479 DSTPGSVSRVK 447
           D T G+++ V+
Sbjct: 84  DPTFGNITLVE 94


>AB053448-1|BAB61905.1|  858|Homo sapiens KIAA1775 protein protein.
          Length = 858

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 21/71 (29%), Positives = 30/71 (42%)
 Frame = -3

Query: 659 APHGFPPGLGGGISHPGLLSLDNPYPGPRKVKYLGVTLDASMTFRPHIKSAVTVPRLFSI 480
           APH F  G+G    +  L SL    P    V  L  T         HI    +   +FS+
Sbjct: 23  APHFFDNGVGSTNGNMALFSLPEDTPVGSHVYTLNGTDPEGDPISYHISFDPSTRSVFSV 82

Query: 479 DSTPGSVSRVK 447
           D T G+++ V+
Sbjct: 83  DPTFGNITLVE 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,364,188
Number of Sequences: 237096
Number of extensions: 2066122
Number of successful extensions: 5897
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5896
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)