Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0704
(703 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 63 3e-10
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 63 3e-10
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 58 2e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 54 2e-07
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 47 3e-05
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 47 3e-05
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 45 1e-04
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 40 0.004
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 40 0.004
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 29 8.1
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 29 8.1
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 29 8.1
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 29 8.1
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 29 8.1
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 63.3 bits (147), Expect = 3e-10
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L K LY + ++P+ TY S + +ASR ID +Q QSR R+ GAPW++RN ++H D
Sbjct: 779 LEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRD 838
Query: 262 LXL 254
L +
Sbjct: 839 LKI 841
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 63.3 bits (147), Expect = 3e-10
Identities = 27/63 (42%), Positives = 40/63 (63%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L K LY + ++P+ TY S + +ASR ID +Q QSR R+ GAPW++RN ++H D
Sbjct: 779 LEFKALLYNSVLKPIWTYGSELWGNASRSNIDIIQRAQSRILRIITGAPWYLRNENIHRD 838
Query: 262 LXL 254
L +
Sbjct: 839 LKI 841
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 57.6 bits (133), Expect = 2e-08
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L +KV LY + ++P+ TY S + +AS ID +Q QS+ R GAPW+VR+ ++ D
Sbjct: 781 LDHKVLLYNSILKPIWTYGSQLWGNASNSNIDIIQRAQSKILRTITGAPWYVRSENIQRD 840
Query: 262 LXLNQFGN 239
L + N
Sbjct: 841 LNIPSVTN 848
Score = 33.1 bits (72), Expect = 0.38
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -3
Query: 614 PGLLSLDNPYPGPRKVKYLGVTLDASMTFRPHIKSAVTVPRL 489
P LL P P +V YLGV LD +T+R HI++ T +L
Sbjct: 723 PPLLLNSIPLPKADEVTYLGVHLDRRLTWRRHIEAKKTQLKL 764
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown protein.
Length = 908
Score = 53.6 bits (123), Expect = 2e-07
Identities = 41/116 (35%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
L NK+T+YK + P Y + A I +Q++Q++ RL G WFVRN LH D
Sbjct: 788 LSNKLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRD 847
Query: 262 LXL-NQFG--NT*SQRRNDTSIR---LCVMIIALSLPP----LTTPRILITQEPVT 125
L L F N S R +D R + S PP PR LIT+ P+T
Sbjct: 848 LKLATVFDEINKHSSRYHDRLERHRNRLASALNRSRPPRRLNRRQPRDLITRSPLT 903
Score = 33.1 bits (72), Expect = 0.38
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 590 PYPGPRKVKYLGVTLDASMTFRPHI 516
P P P KYLGV LD +TF H+
Sbjct: 738 PVPQPNAAKYLGVLLDRRLTFSKHV 762
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 46.8 bits (106), Expect = 3e-05
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLXL 254
KV +YK+ + P + Y V A++ ++ ++ LQ++ R GAPW++R D+ DL +
Sbjct: 796 KVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKV 855
Query: 253 NQFGN 239
+ G+
Sbjct: 856 PKLGD 860
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 566 KYLGVTLDASMTFRPHI 516
KYLG+TLD +TF HI
Sbjct: 751 KYLGITLDRKLTFSRHI 767
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 46.8 bits (106), Expect = 3e-05
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = -1
Query: 433 KVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDDLXL 254
KV +YK+ + P + Y V A++ ++ ++ LQ++ R GAPW++R D+ DL +
Sbjct: 598 KVNIYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERDLKV 657
Query: 253 NQFGN 239
+ G+
Sbjct: 658 PKLGD 662
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 566 KYLGVTLDASMTFRPHI 516
KYLG+TLD +TF HI
Sbjct: 553 KYLGITLDRKLTFSRHI 569
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p protein.
Length = 906
Score = 44.8 bits (101), Expect = 1e-04
Identities = 25/81 (30%), Positives = 39/81 (48%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLHDD 263
LR K +Y C+ P+ Y + A++ + +Q LQ+R R P++VR LH D
Sbjct: 794 LRAKRAVYVHCVAPIWLYGIQIWGIAAKSNYNRIQVLQNRAMRAITDCPYYVRGTTLHRD 853
Query: 262 LXLNQFGNT*SQRRNDTSIRL 200
L L+ S+ + S RL
Sbjct: 854 LNLHTVEEQISRHTSRYSDRL 874
Score = 35.9 bits (79), Expect = 0.053
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -3
Query: 578 PRKVKYLGVTLDASMTFRPHIKS 510
P + KYLG+TLD +TF PH+K+
Sbjct: 748 PSQAKYLGITLDKRLTFGPHLKA 770
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 39.5 bits (88), Expect = 0.004
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLH 269
+ NK+ ++KT P++ Y S V ++ I LQ Q++ +L + P++ LH
Sbjct: 813 ISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLH 870
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 599 LDNPYPGPRKVKYLGVTLDASMTFRPHIKSAV 504
LD+P ++YLG+ D +TF+ HI + +
Sbjct: 760 LDSPIQWVDNIRYLGIIFDKKLTFKYHINNTI 791
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 39.5 bits (88), Expect = 0.004
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -1
Query: 442 LRNKVTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCRLAVGAPWFVRNVDLH 269
+ NK+ ++KT P++ Y S V ++ I LQ Q++ +L + P++ LH
Sbjct: 761 ISNKIIIFKTIFNPILMYGSPVWGRCAQTHIKKLQICQNKLLKLIMNLPYYTNTKYLH 818
Score = 31.1 bits (67), Expect = 1.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 599 LDNPYPGPRKVKYLGVTLDASMTFRPHIKSAV 504
LD+P ++YLG+ D +TF+ HI + +
Sbjct: 708 LDSPIQWVDNIRYLGIIFDKKLTFKYHINNTI 739
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 572 KVKYLGVTLDASMTFRPHIKSAV 504
K YLGV LD+ +T PH+ V
Sbjct: 680 KQSYLGVILDSKLTLSPHVTKVV 702
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 572 KVKYLGVTLDASMTFRPHIKSAV 504
K YLGV LD+ +T PH+ V
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVV 818
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 572 KVKYLGVTLDASMTFRPHIKSAV 504
K YLGV LD+ +T PH+ V
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVV 818
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 572 KVKYLGVTLDASMTFRPHIKSAV 504
K YLGV LD+ +T PH+ V
Sbjct: 758 KQSYLGVILDSKLTLSPHVTKVV 780
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 28.7 bits (61), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 572 KVKYLGVTLDASMTFRPHIKSAV 504
K YLGV LD+ +T PH+ V
Sbjct: 796 KQSYLGVILDSKLTLSPHVTKVV 818
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,910,634
Number of Sequences: 53049
Number of extensions: 622881
Number of successful extensions: 1718
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3087795150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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