Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    31   0.60 
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.4  
U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical ...    28   7.4  
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    28   7.4  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    28   7.4  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 430 VTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCR 314
           + LYKT IRP + Y +VV +   +    T++S+Q+ F R
Sbjct: 221 ILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQNAFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 430 VTLYKTCIRPVMTYASVVIAHASRXXIDTLQSLQSRFCR 314
           + LYKT IRP + Y +VV +   +     ++S+Q+ F R
Sbjct: 191 ILLYKTFIRPRLEYGTVVSSPTKKSDEKAIESVQNAFTR 229


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -3

Query: 155 PNPDHAGASHSRRPRXVLTDPSDPITFALDAFSSNTRSRLRDPGN 21
           PN DH G +H RR R    DPSD             RS   DP +
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSDTTIDHTGHNHRRRRSEDHDPND 286



 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -3

Query: 155 PNPDHAGASHSRRPRXVLTDPSDPITFALDAFSSNTRSRLRD 30
           PN DH G +H RR R    DPSD     +D    N R R  D
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSDT---TIDHTGHNHRRRRSD 324



 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/42 (42%), Positives = 20/42 (47%)
 Frame = -3

Query: 155 PNPDHAGASHSRRPRXVLTDPSDPITFALDAFSSNTRSRLRD 30
           PN DH G +H RR R    DPSD     +D    N R R  D
Sbjct: 198 PNVDHTGHNH-RRKRNHDDDPSDT---TIDHTGHNHRRRRSD 235


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 560 LGVTLDASMTFRPHIKSAVTVPRL 489
           LG+  D+ +TF+PHIK  V++  L
Sbjct: 198 LGILTDSKLTFKPHIKKIVSLALL 221


>U51998-7|AAA96080.2|  769|Caenorhabditis elegans Hypothetical
           protein C12D12.1a protein.
          Length = 769

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 172 PPLTTPRILITQEPVTVDALXTSLRIHQIQ*PLH*TPSALTLGAGLGTPVTV 17
           PP+TTP    +Q PVT  +L T+L    +       PS+ T+     T VTV
Sbjct: 555 PPVTTPT---SQPPVTTTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTV 603


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = -1

Query: 172 PPLTTPRILITQEPVTVDALXTSLRIHQIQ*PLH*TPSALTLGAGLGTPVTV 17
           PP+TTP    +Q PVT  +L T+L    +       PS+ T+     T VTV
Sbjct: 611 PPVTTPT---SQPPVTTTSLLTTLTTPTVPVTTTVVPSSATVPTTPPTTVTV 659


>AL032634-3|CAE45092.1|  412|Caenorhabditis elegans Hypothetical
           protein Y39G8C.4 protein.
          Length = 412

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 668 RGEAPHGFPPGLGGGISHPGLLSLDNPYPG 579
           RG    G PPG+ GG   PG+  +  P PG
Sbjct: 233 RGNIHEGGPPGIVGGSGAPGVHGIPGP-PG 261


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -3

Query: 245 RKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAG-ASHSRRPRXVLTDPSDPITFAL 69
           R+  K    R F K    D       +    + DH   AS S RP  V+  P DPI F L
Sbjct: 383 RRGRKPKKRRGFHKESFEDLESDAKKSKAEQHEDHLPEASCSSRPESVIPPPVDPIQFRL 442


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
 Frame = -3

Query: 245 RKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAG-ASHSRRPRXVLTDPSDPITFAL 69
           R+  K    R F K    D       +    + DH   AS S RP  V+  P DPI F L
Sbjct: 383 RRGRKPKKRRGFHKESFEDLESDAKKSKAEQHEDHLPEASCSSRPESVIPPPVDPIQFRL 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,766,769
Number of Sequences: 27780
Number of extensions: 296903
Number of successful extensions: 708
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)