Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0704
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    26   0.40 
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    26   0.40 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   4.9  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.6  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 72  CKGYWI*WIRKDVSRASTVTGSCVI 146
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 72  CKGYWI*WIRKDVSRASTVTGSCVI 146
           CKG++   +RKD+S A     SC+I
Sbjct: 130 CKGFFKRTVRKDLSYACREEKSCII 154


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -1

Query: 589 HTLGPGRSSTWALPWMHR*HSA 524
           HT+G G S   A P  H  H+A
Sbjct: 417 HTMGHGHSHIHATPHHHHSHAA 438


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 245 RKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDH 141
           RKY +++ ER  D+A R  +R     +  S N  H
Sbjct: 56  RKYRETSKERSRDRAERERSREPKIISSLSNNTIH 90


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 488 FSIDSTPGSVSRVKCPSEQ 432
           F    TPG++ +  CP E+
Sbjct: 252 FRAGPTPGTILKKLCPQEE 270


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 488 FSIDSTPGSVSRVKCPSEQ 432
           F    TPG++ +  CP E+
Sbjct: 167 FRAGPTPGTILKKLCPQEE 185


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 488 FSIDSTPGSVSRVKCPSEQ 432
           F    TPG++ +  CP E+
Sbjct: 486 FRAGPTPGTILKKLCPQEE 504


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,992
Number of Sequences: 438
Number of extensions: 3606
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)