Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0703
         (623 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E48EF4 Cluster: PREDICTED: similar to CDNA seque...    33   5.6  
UniRef50_Q54DU3 Cluster: Putative uncharacterized protein; n=1; ...    33   5.6  
UniRef50_A4FZ39 Cluster: Putative uncharacterized protein; n=1; ...    33   7.3  

>UniRef50_UPI0000E48EF4 Cluster: PREDICTED: similar to CDNA sequence
           BC030477, partial; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to CDNA sequence
           BC030477, partial - Strongylocentrotus purpuratus
          Length = 98

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 469 SNCHSCGLFCKVAFISYYHQL*IHL-DEMSIIHLKYL 576
           S CH  G  CK   I YY QL +HL DE+  I L+YL
Sbjct: 46  SECHHPGNTCKSTLIVYYEQLQLHLKDELRRI-LEYL 81


>UniRef50_Q54DU3 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1520

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 406  HNFVKNNNTHFLF*HTKSHSS*KNETFKLLTSQREVFVHNYISSGMINLIISNFTIKRIC 227
            H+ + NNN H+ + + K + +  N    +L    +V ++    SG   L++ +  I    
Sbjct: 1307 HSSINNNNNHYYYYYYKQNINNSNNNNNILPKGLKVHIYTKSRSGNQLLLVKSLDISMFN 1366

Query: 226  MYTKI 212
            M+T +
Sbjct: 1367 MFTSL 1371


>UniRef50_A4FZ39 Cluster: Putative uncharacterized protein; n=1;
           Methanococcus maripaludis|Rep: Putative uncharacterized
           protein - Methanococcus maripaludis
          Length = 401

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = -1

Query: 377 LFILTYKITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVHKNNCIFI 198
           LFI +  I F++ K N  ++NF KG+     Y +R   FD+ KF     +  H     FI
Sbjct: 91  LFIFSALILFEIFKLNYYVLNF-KGAFKTLNYDWRMS-FDFFKFLLNRTIFTH----AFI 144

Query: 197 YLQNGYIK 174
           +L   ++K
Sbjct: 145 FLLGSFLK 152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 546,948,030
Number of Sequences: 1657284
Number of extensions: 10503432
Number of successful extensions: 19166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19157
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)