Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0703
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   2.2  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   5.1  

>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 461 LINQIATAVACFVKLHLFLITTSSKFIW 544
           LI  I+T +ACF  L   L    S  +W
Sbjct: 225 LIKSISTYIACFAMLIFLLCNVGSHVVW 252


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 377 LFILTYKITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKF 246
           + +L YK+T  +   +I I   A   I A LY+F    F++ KF
Sbjct: 116 VLVLNYKVTLLVTVFSIVIPFGAGAGISAGLYKFTTREFEFGKF 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,962
Number of Sequences: 5004
Number of extensions: 51083
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)