Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0703
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)                  31   0.76 
SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)              29   2.3  
SB_20474| Best HMM Match : DUF1505 (HMM E-Value=5.7)                   29   2.3  
SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)                 29   2.3  

>SB_4423| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-08)
          Length = 1167

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = -1

Query: 359 KITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVH 219
           K+T  L+K  I I N ++ ++   L+++RN   D +K Y   YL VH
Sbjct: 128 KLTVNLEKTKIMIFNNSRKTMNNYLFKYRNSKVDIVKSY--KYLGVH 172


>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 377 VCIIIFHKIVFNMHECYRKL*NIDTARKLINQIATAVACFVKLHLFLITTSSKFIWMK 550
           +  I FH+    +H C +K  N+D+A+KL+  I      F+   LF +    +  W K
Sbjct: 137 ITAIAFHRYRMLVH-CGKKQLNVDSAKKLVFVIWLIAFVFIVGPLFFVMDLEETAWRK 193


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 359  KITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVH 219
            K+T  L+K  I I N +  ++   L+++RN   D +K Y   YL VH
Sbjct: 1115 KLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSY--KYLGVH 1159


>SB_33535| Best HMM Match : RVT_1 (HMM E-Value=1.4013e-45)
          Length = 469

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 359 KITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVH 219
           K+T  L+K  I I N +  ++   L+++RN   D +K Y   YL VH
Sbjct: 412 KLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSY--KYLGVH 456


>SB_20474| Best HMM Match : DUF1505 (HMM E-Value=5.7)
          Length = 244

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 359 KITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVH 219
           K+T  L+K  I I N +  ++   L+++RN   D +K Y   YL VH
Sbjct: 57  KLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSY--KYLGVH 101


>SB_48616| Best HMM Match : RVT_1 (HMM E-Value=2.8e-26)
          Length = 327

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -1

Query: 359 KITFQLKK*NIQIINFAKGSICAQLYQFRND*FDYIKFYHKTYLHVH 219
           K+T  L+K  I I N +  ++   L+++RN   D +K Y   YL VH
Sbjct: 189 KLTVNLEKTKIMIFNNSGKTMNNYLFKYRNSKVDIVKSY--KYLGVH 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,213,798
Number of Sequences: 59808
Number of extensions: 342473
Number of successful extensions: 552
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)