Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0703
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical p...    27   8.2  
AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical...    27   8.2  

>AF036692-6|AAB88328.1|  397|Caenorhabditis elegans Hypothetical
           protein C44B12.5 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 180 HKVISTHLCERNWTLKLKSYYAIKCI 103
           HKV ST+L E NW  K K +  +KC+
Sbjct: 253 HKVDSTYLSEANWEPK-KYHKNVKCV 277


>Z80215-10|CAB02271.3|  175|Caenorhabditis elegans Hypothetical
           protein C36B1.6 protein.
          Length = 175

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 458 FLQCQYFIIFYSIHAC 411
           F+ C +FIIFYSI  C
Sbjct: 124 FIFCAFFIIFYSITTC 139


>AL031627-22|CAI79188.1|  213|Caenorhabditis elegans Hypothetical
           protein Y102A5C.36 protein.
          Length = 213

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
 Frame = +1

Query: 289 CAQILPFAKLII*MFHFFNWNVILYVKIKSVYY----YFSQNCVQ 411
           C  + PF   II MF  F          K +Y+    YFS NCV+
Sbjct: 19  CFFVFPFVSFIILMFLVFFTGKKCLSAFKLIYFYNFLYFSPNCVE 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,833
Number of Sequences: 27780
Number of extensions: 287070
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)