Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0700
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RT00 Cluster: Drosophila melanogaster CG5044 gene pro...    37   0.42 
UniRef50_Q22AN0 Cluster: Putative uncharacterized protein; n=1; ...    36   1.3  
UniRef50_Q54P35 Cluster: Putative uncharacterized protein; n=1; ...    35   1.7  
UniRef50_P10845 Cluster: Botulinum neurotoxin type A precursor (...    34   3.0  
UniRef50_Q5QWV9 Cluster: Uncharacterized conserved protein; n=1;...    33   6.8  
UniRef50_Q5CR76 Cluster: Putative uncharacterized protein; n=2; ...    33   6.8  
UniRef50_Q6L2B4 Cluster: Lipopolysaccharide N-acetylglucosaminyl...    33   6.8  
UniRef50_Q1V1V4 Cluster: Putative uncharacterized protein; n=2; ...    33   9.0  

>UniRef50_Q7RT00 Cluster: Drosophila melanogaster CG5044 gene
           product; n=6; Plasmodium|Rep: Drosophila melanogaster
           CG5044 gene product - Plasmodium yoelii yoelii
          Length = 476

 Score = 37.1 bits (82), Expect = 0.42
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +3

Query: 309 TIDRRHYH*HITLDSRN*VNFTSCYDIQT*IYVYLLYSTSKTFSKNYGMN--YEMNKMII 482
           TID   +   + L++   +NF SC DI   I  YL+ +T ++F+ NY  N  +E+ K II
Sbjct: 363 TIDNELFIKALNLETNALLNFVSCPDILNGITSYLVKNTDRSFNSNYINNNIFEVKKDII 422

Query: 483 K 485
           +
Sbjct: 423 Q 423


>UniRef50_Q22AN0 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 835

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +3

Query: 384 DIQT*IYVYLLYSTSKTFSKNYGMNYEMNKMIIKLNRQIAFYQPVLLLFIKIIN---TNK 554
           DI++ +++Y  +    T++KNY    +    + K  RQI FYQ  +++  K +     +K
Sbjct: 492 DIKSAVFLYDQFRNLSTYTKNYSKKAKSLLQLAKCARQINFYQEAIIILKKALQYAWYSK 551

Query: 555 HIDAQSNINNMFETHCDIKCNNRRAMRY 638
             D +  I + F  +   + N  +A  Y
Sbjct: 552 ENDIELEIYDEFGRNYYFQGNIMKAQYY 579


>UniRef50_Q54P35 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 300

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 426 SKTFSKNYGMNYEMNKMIIKLNRQIAFYQPVLLLFIKIINTNKHIDAQSNINNMFETHCD 605
           SK +SK   MN+     I+ LN+QI   +    +++     NK+ +  +N NN  + + D
Sbjct: 36  SKFYSKLTKMNHNKTYNILNLNKQIKQLEICNNIYL---TDNKNNNNNNNNNNNIDNNMD 92

Query: 606 IKCNNRRAMR-YPGA*LNLNRL 668
             CNN  +   Y    L+L +L
Sbjct: 93  HTCNNNNSFHIYDNYMLSLKKL 114


>UniRef50_P10845 Cluster: Botulinum neurotoxin type A precursor (EC
           3.4.24.69) (BoNT/A) (Bontoxilysin-A) (BOTOX) [Contains:
           Botulinum neurotoxin A light- chain; Botulinum
           neurotoxin A heavy-chain]; n=24; Clostridium
           botulinum|Rep: Botulinum neurotoxin type A precursor (EC
           3.4.24.69) (BoNT/A) (Bontoxilysin-A) (BOTOX) [Contains:
           Botulinum neurotoxin A light- chain; Botulinum
           neurotoxin A heavy-chain] - Clostridium botulinum
          Length = 1296

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 22/71 (30%), Positives = 35/71 (49%)
 Frame = +3

Query: 366 NFTSCYDIQT*IYVYLLYSTSKTFSKNYGMNYEMNKMIIKLNRQIAFYQPVLLLFIKIIN 545
           NFT  ++    + V  +  TSKT S + G N  +N + IK+N    F+ P    F   +N
Sbjct: 418 NFTGLFEFYKLLCVRGII-TSKTKSLDKGYNKALNDLCIKVNNWDLFFSPSEDNFTNDLN 476

Query: 546 TNKHIDAQSNI 578
             + I + +NI
Sbjct: 477 KGEEITSDTNI 487


>UniRef50_Q5QWV9 Cluster: Uncharacterized conserved protein; n=1;
           Idiomarina loihiensis|Rep: Uncharacterized conserved
           protein - Idiomarina loihiensis
          Length = 211

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 20/93 (21%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
 Frame = +3

Query: 405 VYLLYSTSKTFSKNYGMNYEMNK-----MIIKLNRQIAFYQPVLLLFIKIINTNKHIDAQ 569
           +Y L+ T ++FS+ Y M++++ +     +++K   ++ +   ++ L +K  +TN  +   
Sbjct: 28  LYRLHQTLESFSERYQMHFDVFRGDEFQLLLKRPEKVIYLATIIRLSLKSGSTNIDVRQS 87

Query: 570 SNINNMFETHCDIKCNNRRAMRYPGA*LNLNRL 668
            ++ +  E   D+K +   A    G   NLN++
Sbjct: 88  LSVGDSNELRDDVKSSTGEAFVLSGQ--NLNKM 118


>UniRef50_Q5CR76 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 651

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 414 LYSTSKTFSKNYGMNYEMNKMIIKLNRQIAFY-QPVLLLFIKIINTNKHI 560
           LY+T+K  S NY   +++N   +KL R   +Y Q +  LF+K    NK I
Sbjct: 190 LYNTNKESSTNYEHYFKLNVESVKLIRSFFYYFQNLSELFVKEKKNNKKI 239


>UniRef50_Q6L2B4 Cluster: Lipopolysaccharide
           N-acetylglucosaminyltransferase; n=1; Picrophilus
           torridus|Rep: Lipopolysaccharide
           N-acetylglucosaminyltransferase - Picrophilus torridus
          Length = 410

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +3

Query: 453 MNYEMNKMIIKLNRQI---AFYQPV-LLLFIKIINTNKHIDAQSNINNMFETHCDIKCNN 620
           +N  +  +I+  N  I   +FYQ + L+  IK IN NK+I     +NN +  + +IK N 
Sbjct: 142 LNRSIKLLIVSGNPMILIFSFYQYINLIRIIKRINKNKNIKIILTVNNEYYRNINIK-NK 200

Query: 621 RRAMRYPG 644
              + YPG
Sbjct: 201 EVKILYPG 208


>UniRef50_Q1V1V4 Cluster: Putative uncharacterized protein; n=2;
           Candidatus Pelagibacter ubique|Rep: Putative
           uncharacterized protein - Candidatus Pelagibacter ubique
           HTCC1002
          Length = 151

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -2

Query: 189 TKDKMYFIFHLSILGIKKEKRCNMNFLSGRFSKKRTASN*KRTLVV 52
           T   ++ I HL+   + K+ + N NFL+ +F+KKR   N ++  ++
Sbjct: 78  TSPSLFMIHHLANNDMSKKIQINENFLNQQFTKKRLKENFQKNFLI 123


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,420,072
Number of Sequences: 1657284
Number of extensions: 10257311
Number of successful extensions: 22062
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22036
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)