Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0700
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.91 
SB_52652| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)             28   8.5  

>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1387

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 408 YLLYSTSKTFSKNYGMNYEMNKMIIKLNRQIAFYQPV 518
           Y    TS++ S+ YG+ Y  N M   +++Q+  YQP+
Sbjct: 146 YPTMQTSQSQSQGYGLGYAGNPMAQLMSQQVTAYQPM 182


>SB_52652| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +3

Query: 516 VLLLFIKIINTNKHI-DAQSNINNMFETHCDIKCNNRRAMRY 638
           +L+LF+  + +   I D ++  +    ++C  KC +R+++RY
Sbjct: 7   ILVLFMAALTSQAFIFDDRTAYDGQISSYCAAKCEDRKSVRY 48


>SB_56318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.016)
          Length = 583

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -3

Query: 197 YFKQKIKCISFFTYPY*ALKKKKDVT*IFYPDDSQKKER 81
           YF ++I+C   +TY Y A+++  + + I+ P+   +  R
Sbjct: 545 YFCKRIRCSRAYTYTYVAVERTLEASRIWVPEACGRSRR 583


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,002
Number of Sequences: 59808
Number of extensions: 305184
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)