Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0700
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81112-1|CAB03272.2|  673|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical...    28   5.7  

>Z81112-1|CAB03272.2|  673|Caenorhabditis elegans Hypothetical
           protein T02B5.1 protein.
          Length = 673

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 408 YLLYSTSKTFSKNYGMNYEMNKMIIKLNRQIAFYQPVL 521
           Y+LY   +TFSK     Y      + L+ ++ FY P +
Sbjct: 373 YVLYEEPETFSKKCQKQYMNGNSSMNLSNEMEFYTPAI 410


>AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical
           protein K04F1.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 519 LLLFIKIINTNKHIDAQSNINNMFETHCDIKCN 617
           +L+F  II+       Q++I+  F++HC+ +CN
Sbjct: 18  VLIFFNIISLTA---TQADISEFFDSHCESRCN 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,778
Number of Sequences: 27780
Number of extensions: 257579
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)