Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0699
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    37   0.003
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    37   0.003
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.5  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    27   2.5  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    27   2.5  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.5  
SPAC17A5.09c |||protein phosphatase regulatory subunit Glc9|Schi...    26   4.4  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.6  

>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 404 STNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
           +  KG Q+L  MGWS G GLG+  QG+ +P+
Sbjct: 145 NNGKGKQLLEMMGWSRGKGLGSENQGMVDPV 175


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 17/32 (53%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +2

Query: 401 DSTNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
           ++T  G +ML KMG+  G GLGA+ +GIAEP+
Sbjct: 114 NTTGFGAKMLEKMGYKQGQGLGANAEGIAEPV 145


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 163 SHDHVHSHLKENTICGKXREKVQEKDED 246
           SHDH HSH K +      REK +EK +D
Sbjct: 721 SHDHGHSHSKSH-----DREKEKEKKKD 743


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
 Frame = -1

Query: 540 PTP*ILVLSISTKPPLIGSAIPWPEAPRPPA--LQPIXGSI*CPLFVESIPPEVVGYAPP 367
           P P I   S ++ PP+   A P P +  PPA    P+      P    ++PP      PP
Sbjct: 145 PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 398 IDSTNKGHQMLPKMGWSAG-GLG 463
           I   N G ++L K+GW AG GLG
Sbjct: 650 ISKENPGRRLLEKLGWYAGKGLG 672


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 21  KEDAIAQGYRQKSKSPSPI---PKDLQKQPTPPGRRYRSRSK 137
           KE+ I++  R  S+S SP+   P+  + QP  P ++ +S  K
Sbjct: 177 KEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKKEKSEKK 218


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 413 KGHQMLPKMGWSAGGLGASGQGIAEPIS 496
           KG++++  MGW A GL A    I   IS
Sbjct: 94  KGYKVIHPMGWDAFGLPAENAAIENGIS 121


>SPAC17A5.09c |||protein phosphatase regulatory subunit
           Glc9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 60  KSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
           K P P+P     +PT  G RY  R K P P
Sbjct: 148 KEPFPVPCT---EPTTSGDRYTVRMKAPTP 174


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 510 STKPPLIGSAIPWPEAPRPPALQPI 436
           +T  P I  A P P +P+P A++P+
Sbjct: 582 TTTTPSITPADPVPTSPKPLAIEPV 606


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,522,176
Number of Sequences: 5004
Number of extensions: 49794
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)