Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0699
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 44 9e-05
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 44 1e-04
02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,362... 42 6e-04
08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458... 33 0.21
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 31 0.64
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 31 0.64
08_02_0036 - 11455762-11455802,11455996-11456104,11456207-114568... 31 0.85
07_03_1107 - 24024387-24024497,24025799-24026410 31 1.1
09_02_0082 - 4060018-4061604 30 1.5
05_01_0591 + 5308735-5309178,5309265-5310314 30 1.5
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 29 2.6
05_06_0161 + 26078019-26078510 29 2.6
10_01_0337 - 3711417-3711762,3712536-3712588,3712735-3712819,371... 29 3.4
08_02_0526 + 18184146-18184168,18184247-18184438,18184846-181849... 29 4.5
01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146 28 6.0
11_06_0610 - 25449085-25453284 28 7.9
04_04_1513 - 34107700-34107765,34108475-34108551,34108640-341086... 28 7.9
01_07_0248 + 42261373-42261609,42261733-42261905,42261986-422620... 28 7.9
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVEXDKTNI----QGVGVSLNDPY 562
I + N GH++L KMGW G GLG+ G A+PI G V+ D + G S +D Y
Sbjct: 408 IQADNIGHKLLSKMGWREGEGLGSERSGRADPIMAGDVKKDHLGVGAVQPGEVTSEDDIY 467
Query: 563 ENFR 574
E ++
Sbjct: 468 EQYK 471
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/66 (39%), Positives = 34/66 (51%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRL 577
+ S+N G ++L KMGW GLG + QGI EPI G + GVG D + F
Sbjct: 59 LTSSNVGFRLLQKMGWKGKGLGKNEQGITEPIKAGIRDAK----LGVGKQEQDDF--FTS 112
Query: 578 QTKVQR 595
+ VQR
Sbjct: 113 EDNVQR 118
>02_01_0500 - 3623837-3624019,3624591-3624778,3625209-3626147,
3626311-3626479,3626701-3626871,3626948-3627016,
3627094-3627201,3627844-3627997,3628659-3628738,
3628822-3628914,3628951-3629073,3629165-3629915,
3630123-3630163,3630338-3630385
Length = 1038
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +2
Query: 383 TTSGGIDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVE 511
T ID +N G+++L MGW G GLG +G GI EP+ V+
Sbjct: 954 TADRAIDESNVGNRILRNMGWQEGLGLGKTGSGIKEPVQAKSVD 997
>08_01_0527 +
4580599-4580818,4580933-4581806,4581891-4581955,
4582055-4582110,4582955-4583058,4583310-4583382,
4583474-4583654,4584537-4584622
Length = 552
Score = 33.1 bits (72), Expect = 0.21
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
RQ+ +PSP P+D + P R+ R R TP P
Sbjct: 152 RQRQDTPSPDPRDAAGKDLSPPRQRRRRQDTPSP 185
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 422 QMLPKMGWSAG-GLGASGQGIAEPI 493
+M+ KMG+ G GLG SGQG+ +PI
Sbjct: 310 KMMAKMGYREGMGLGVSGQGMLDPI 334
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 31.5 bits (68), Expect = 0.64
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 365 LGGAYPTTSGGIDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
+GGA + N +M+ MGW G LG S +G+ EPI
Sbjct: 402 MGGASVDMNFRSSGLNSAKKMMENMGWKEGEALGKSTKGMVEPI 445
>08_02_0036 -
11455762-11455802,11455996-11456104,11456207-11456854,
11457422-11457491,11458563-11458624,11458729-11458803,
11459423-11459514,11460233-11461466
Length = 776
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +2
Query: 416 GHQMLPKMGWSAG-GLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRLQTK 586
G +M+ KMG+ G GLG GQG+ +PI ++ K+ G+GV + E + +++
Sbjct: 614 GSKMMAKMGFIEGTGLGKDGQGMMQPIQP--IQRPKS--LGLGVEFDSEAEAIKARSE 667
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 416 GHQMLPKMGWSAG-GLGASGQGIAEPIS 496
G +M+ +MG+ G GLG GQGI P++
Sbjct: 699 GSKMMARMGFVEGSGLGKDGQGIVNPLT 726
>07_03_1107 - 24024387-24024497,24025799-24026410
Length = 240
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
K +P+P P +K+P+PP ++ + SK P P
Sbjct: 135 KPDAPAPAPAK-KKKPSPPSKKKKKSSKAPAP 165
>09_02_0082 - 4060018-4061604
Length = 528
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 540 PTP*ILVLSISTKPPLIGSAIPWPEAPRPPALQP 439
PTP +L + T PP +P P AP PPA P
Sbjct: 175 PTPPVLATHVPT-PPAPAPPVPTPLAPAPPADVP 207
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 501 PPLIGSAIPWPEAPRPPALQPI 436
PP++ + +P P AP PP P+
Sbjct: 177 PPVLATHVPTPPAPAPPVPTPL 198
>05_01_0591 + 5308735-5309178,5309265-5310314
Length = 497
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +2
Query: 422 QMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGV--SLNDPYENFRLQTKV 589
Q PK GG GA G P+S V + ++ GVG+ S N E F +T V
Sbjct: 417 QSAPKQRPETGGAGAGGGRKRVPLSEVVVVESRASLSGVGMQRSCNRVQEAFNFKTAV 474
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
+++ P P + +QP PP +R +SR+K P
Sbjct: 91 QEQPSPPPPASSNTTQQPPPPQQRQQSRAKKP 122
>05_06_0161 + 26078019-26078510
Length = 163
Score = 29.5 bits (63), Expect = 2.6
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = +2
Query: 368 GGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVG 541
GGA P G D+ KG G GG+GA+ QG GG + D+ ++G+G
Sbjct: 95 GGAVPGAGGAADAHGKGRG--GGGGEGRGGVGAAAQGRG---GGGCISHDEI-VEGMG 146
>10_01_0337 -
3711417-3711762,3712536-3712588,3712735-3712819,
3713384-3713661
Length = 253
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 27 DAIAQGYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNI 155
D I +G +S+SP P+ P P PG+ K+PEP++
Sbjct: 145 DGIGEGGAAESRSPPPMKVKHHLMPPPIVRAPGQFQEDEVKSPEPSV 191
>08_02_0526 +
18184146-18184168,18184247-18184438,18184846-18184954,
18185071-18185220,18185973-18186136,18186273-18186359,
18187083-18187137,18187911-18188333
Length = 400
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
++S S SP PK + PP RR SRS P
Sbjct: 33 RRSTSRSPPPKKSDSRSPPPRRRSTSRSPRP 63
>01_01_0720 - 5593311-5595371,5597550-5598027,5598118-5598146
Length = 855
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 27 DAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPE 146
D +A +SPSP P PT P RR +++ P+
Sbjct: 48 DELAAAPPLPPRSPSPSPSPPPPPPTKPSRRTLGKARAPK 87
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -1
Query: 501 PPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPP 367
PP + P PE P PP I S P E +PP V +PP
Sbjct: 983 PPSPAKSTPPPEKPLPPHTPTINSS--PPSEEEYMPPSPVKSSPP 1025
>04_04_1513 -
34107700-34107765,34108475-34108551,34108640-34108688,
34109144-34109218,34109447-34109554,34109728-34109835,
34110708-34111256
Length = 343
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 33 IAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRS 128
+A+G++ SP Q+ P PP RR+RS
Sbjct: 56 LARGFQADGGEVSPANPPWQRCPPPPRRRFRS 87
>01_07_0248 + 42261373-42261609,42261733-42261905,42261986-42262058,
42262148-42262282,42262352-42262562,42262886-42263034,
42263169-42263267,42263821-42263989,42264176-42264308,
42264600-42264694,42264774-42264882,42265136-42265295,
42265433-42265594,42265814-42265985,42266254-42266402,
42266914-42266951,42267779-42267839,42267913-42268155,
42268233-42268315,42269521-42269609,42270449-42270495,
42270576-42270656,42270737-42270899,42271077-42271267,
42271691-42271762
Length = 1097
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +3
Query: 51 QKSKSPSPI--PKDLQKQPTPPGRRYRSRSKTPEPN 152
Q+ + PSP P ++ TPP RR S + P+P+
Sbjct: 1006 QQRREPSPRRKPASPPRKRTPPNRRIESPRRQPDPS 1041
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,264,647
Number of Sequences: 37544
Number of extensions: 393192
Number of successful extensions: 1667
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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