Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0699
(678 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.030
SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08) 36 0.040
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 32 0.37
SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4) 32 0.49
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 31 0.86
SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18) 30 1.5
SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24) 30 2.0
SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41) 30 2.0
SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016) 30 2.0
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 30 2.0
SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8) 30 2.0
SB_14081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33) 29 2.6
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_48388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_42975| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 28 6.0
SB_14050| Best HMM Match : fn3 (HMM E-Value=5.2) 28 6.0
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 28 8.0
SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_28912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 418
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 410 NKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
N G+QML K GW G GLG+ GQGI PI
Sbjct: 342 NIGYQMLKKAGWEEGKGLGSKGQGITAPI 370
>SB_26512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 421
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 392 GGIDSTNKGHQMLPKMGWSA--GGLGASGQGIAEPIS 496
G I N G+++L KMGW GLG S QG+AEPI+
Sbjct: 128 GFIPQDNLGYRLLKKMGWRGYGTGLGKSSQGLAEPIT 164
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 35.9 bits (79), Expect = 0.030
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQK-SKSPSPIPKDLQK--QPTPPGRRYRSRSKTPEP 149
R+ + D+ + R++ S +PSP P+ +K P+PP RR RS S +P P
Sbjct: 896 RRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPP 944
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
R++ +SPSP P+ ++ P RR R S TP P
Sbjct: 885 RRRRRSPSPPPRRRRRDSYSPSRRRRD-SPTPSP 917
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
R++ +SPS P ++ P PP +R R+ S P P
Sbjct: 932 RRRRRSPSNSPPPMRSSPLPPPQRKRA-STPPSP 964
>SB_8887| Best HMM Match : G-patch (HMM E-Value=1.2e-08)
Length = 739
Score = 35.5 bits (78), Expect = 0.040
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAG-GLGASGQGIAEP 490
I++ NKG ++L KMGW G GLG G EP
Sbjct: 520 INADNKGRKLLEKMGWKTGEGLGKEKSGRVEP 551
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
R D + + + SKS +P+P+ + P PPG S SK P
Sbjct: 183 RSRSSDELVKSNSESSKS-NPVPRPRNRPPPPPGASRSSASKEP 225
>SB_28630| Best HMM Match : DUF1665 (HMM E-Value=3.4)
Length = 428
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 3 NSARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSK 137
+S R+ + + + +R +S+S SP K + T P RRYRS K
Sbjct: 327 SSERRRRSRSRSTEHRYRSRSRSPRRKHRRSTSTSPSRRYRSGKK 371
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 31.1 bits (67), Expect = 0.86
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = -1
Query: 516 SISTKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGVG 346
S+ PP +G A P P P PP P+ G P +E PP +G PP G G
Sbjct: 350 SMGMAPPPVGGAAPPP--PPPP---PVGGPPPPPPPIEGRPPSSLGNPPPPPPPGRG 401
>SB_27558| Best HMM Match : dsrm (HMM E-Value=9.6e-18)
Length = 765
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 6 SARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
S R+ ++ + + R +S+S SP + + +P RYRSRS+ P
Sbjct: 305 SPRRYRDSSSCRRRRSRSRSRSPKSRLRSRSRSPYRIRYRSRSRPP 350
>SB_11987| Best HMM Match : OTU (HMM E-Value=1.1e-24)
Length = 1142
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 501 PPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAP 370
PP +IP P P+PPA P + P+ +E P G P
Sbjct: 448 PPPAADSIPTPPQPQPPATSPEVEEV--PVQLEQAPSVEAGQEP 489
>SB_5325| Best HMM Match : Drf_FH1 (HMM E-Value=0.41)
Length = 638
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPG---RRYRSRSKTP 143
R KS+SPSP Q+ TPP R+RSRS +P
Sbjct: 253 RIKSRSPSPYWGSRQRSLTPPAYRKSRHRSRSLSP 287
>SB_50351| Best HMM Match : I-set (HMM E-Value=0.00016)
Length = 419
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +3
Query: 39 QGYRQKSKSPSPIPKDLQKQPTPP-GRRYRSRSKTPEP 149
Q +Q S +P P D Q PTP G+ + S TP P
Sbjct: 329 QSNKQSSPTPPPRQSDKQSPPTPSRGQSNKQSSPTPPP 366
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 60 KSPSPIPKDLQKQPTPPGRRYRSRSKTPE 146
KSPSP+PK +K PP R +R+K +
Sbjct: 301 KSPSPLPKKKKKTGPPPPVRRSTRNKNQQ 329
>SB_14700| Best HMM Match : MbeB_N (HMM E-Value=1.8)
Length = 815
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +1
Query: 37 RKVIDKNRNHPVQFLRIYRNNLLHQEEDTDHGVKHPNLIYQ*SHDHVHSHLKEN 198
R + K++++ V I N LH D + + H +L + +DH H HL +N
Sbjct: 357 RACVGKSQHNLVPIANIRPNRYLHHLHD--YYLHHHHLHHNHKNDHKHHHLHDN 408
>SB_14081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQK---SKSPSPIPKDLQKQPT---PPGRRYRSRSKTPEPNIPM 161
RKM++ G+R+K P P PKD ++ P+ P S SK P N+ +
Sbjct: 137 RKMEQINKNTGFRRKVLRKSDPHPYPKDTKRSPSKSMPKSPGGHSASKAPASNVSL 192
>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
R+ + + ++ R++ +S SP + + P+P R +RSRS++ P
Sbjct: 220 RRSRSRSRSRSPRRRRRSRSPRRRRRSRSPSPHHRSHRSRSRSRSP 265
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 39 QGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPE 146
+ +R +S+S SP + + + +P RR+RSRS +PE
Sbjct: 254 RSHRSRSRSRSPRRRHSRSR-SPTHRRHRSRSHSPE 288
>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
Length = 952
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 365 LGGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGV 544
+GG T+GG+ + G + + G + GG+ S G+A GG +QG GV
Sbjct: 231 VGGRAGNTNGGVQGSEVGLAVGGRAGNTNGGVQGSEVGLA---VGGRAGNTNGGVQGSGV 287
Query: 545 SLN 553
L+
Sbjct: 288 GLS 290
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = -1
Query: 501 PPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLG 355
PP+IG P PP + P SI P ++++PP V PP +G
Sbjct: 384 PPMIGPVT----VPPPPLIPPPQASIPPPTMIQTLPPPSV---PPPPIG 425
>SB_8813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 896
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 6 SARKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
S+ K K+ + Q + KSP P P+++ K R RSRS PE P
Sbjct: 658 SSSKNKDIRVLQDHGVVKKSPPPSPREMAKS------RERSRSLRPEKKYP 702
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 24 EDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNI 155
+ +++Q P+P PK++ QP R TPEP++
Sbjct: 161 QSSMSQEMDSMETEPTPPPKEMPPQPAEESRTPPGSRSTPEPSL 204
>SB_48388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 434 KMGWSAGGLGASGQGIAEPISGG 502
K GW GG G G +A P GG
Sbjct: 214 KGGWENGGFGGGGSAMAHPGGGG 236
>SB_19615| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1376
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Frame = +3
Query: 33 IAQGYRQKSKSPSPIPKDL---QKQPTPPGRRYRSRSKTPEPNIP 158
I G +K K P P L K P PP R +S T P+IP
Sbjct: 955 IVNGVAEKKKPPRPQYPSLPTNSKVPDPPRGRSKSMGATHAPSIP 999
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 57 SKSPSPIPKDLQKQPTPPGRRYRSRSKTPE 146
SK+P P+ ++ P ++++ RS TPE
Sbjct: 1100 SKTPGPVSLTTKQSTKPEAKKHKRRSSTPE 1129
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 516 SISTKPPLIGSAIPWPEAPRPPALQPI 436
++S P +++P+P APR PA PI
Sbjct: 392 ALSMVPRFYANSLPFPYAPRYPAFHPI 418
>SB_6280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 22/54 (40%)
Frame = +2
Query: 368 GGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNI 529
GG T GG+ +T G G GG G + G P SGG E N+
Sbjct: 318 GGGGGATGGGVGATGGGGGATGGGGGVTGGGGGATGGGGGPGSGGCGEDGTENV 371
>SB_42975| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 45 YRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
+ +++ S SP +D PTP GR Y R+ P P
Sbjct: 530 FAKQASSSSPAQQDF---PTPTGREYILRTSAPRP 561
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKT 140
R +S+SP PK + P+ RR RS+S++
Sbjct: 473 RSRSRSPRRRPKSYSRSPSGSPRRSRSKSRS 503
>SB_14050| Best HMM Match : fn3 (HMM E-Value=5.2)
Length = 200
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPP 451
STKPP++ S +P P P+ P
Sbjct: 20 STKPPILKSQLPGPRGPQGP 39
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +2
Query: 365 LGGAYPTTSGGIDSTN--KGHQMLPKMGWSAGGLGASGQG 478
+ G +TSGG+ S + G MG AGG+G SG+G
Sbjct: 1232 ISGDMVSTSGGMGSISGGMGSSFGGGMGSVAGGMGTSGRG 1271
>SB_47598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2332
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIPM 161
+S +P+P P K+PTPP S K +P P+
Sbjct: 938 RSPTPTPPPSPPPKEPTPPPSSKPSPVKEIKPKKPI 973
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,282,944
Number of Sequences: 59808
Number of extensions: 394022
Number of successful extensions: 1267
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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