Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0699
(678 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical pr... 64 1e-10
AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CT... 64 1e-10
AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical ... 40 0.002
AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical ... 40 0.002
Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical pr... 36 0.035
DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein. 36 0.035
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 32 0.43
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.76
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 30 1.3
AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical... 30 1.7
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 2.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 2.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 2.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 2.3
Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical pr... 29 4.0
U53141-7|AAA96109.1| 82|Caenorhabditis elegans Hypothetical pr... 29 4.0
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr... 29 4.0
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.0
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.0
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.0
Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical pr... 27 9.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.3
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical... 27 9.3
AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical... 27 9.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 9.3
>Z81094-5|CAB03149.2| 675|Caenorhabditis elegans Hypothetical
protein F58G11.5 protein.
Length = 675
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/57 (52%), Positives = 36/57 (63%)
Frame = +2
Query: 410 NKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRLQ 580
NKG Q++ KMGW GLGA+ GI +P+SGG V G+G SL DPYE FR Q
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESGIVDPVSGGEVRNRNEQFMGLGRSL-DPYEQFRKQ 661
>AF536544-1|AAN77185.1| 675|Caenorhabditis elegans SR-related CTD
associated factor 6 protein.
Length = 675
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/57 (52%), Positives = 36/57 (63%)
Frame = +2
Query: 410 NKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRLQ 580
NKG Q++ KMGW GLGA+ GI +P+SGG V G+G SL DPYE FR Q
Sbjct: 606 NKGAQLMAKMGWGGKGLGANESGIVDPVSGGEVRNRNEQFMGLGRSL-DPYEQFRKQ 661
>AL032649-4|CAA21703.2| 511|Caenorhabditis elegans Hypothetical
protein Y55D9A.2b protein.
Length = 511
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDP 559
+DS N G ++L MGWS G GLG QG EP++ K N +G+G + +P
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVA----TEVKNNRKGLGANEKEP 481
>AL032649-3|CAA21702.2| 502|Caenorhabditis elegans Hypothetical
protein Y55D9A.2a protein.
Length = 502
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDP 559
+DS N G ++L MGWS G GLG QG EP++ K N +G+G + +P
Sbjct: 431 LDSGNVGFKLLKSMGWSEGQGLGKEKQGHVEPVA----TEVKNNRKGLGANEKEP 481
>Z49908-1|CAA90093.1| 816|Caenorhabditis elegans Hypothetical
protein C07E3.1a protein.
Length = 816
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 395 GIDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
G ++NK +M+ MG+ G GLGA GQGI EP+
Sbjct: 136 GDGNSNKIMKMMQAMGYKPGEGLGAQGQGIVEPV 169
>DQ342049-1|ABC69941.1| 830|Caenorhabditis elegans STIP protein.
Length = 830
Score = 35.5 bits (78), Expect = 0.035
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 395 GIDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
G ++NK +M+ MG+ G GLGA GQGI EP+
Sbjct: 150 GDGNSNKIMKMMQAMGYKPGEGLGAQGQGIVEPV 183
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.9 bits (69), Expect = 0.43
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 57 SKSPSPIPKDLQ-KQPTPPGRRYRSRSKTPEPNIP 158
SKSP P PK + + +PP RR RS S + P P
Sbjct: 354 SKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAP 388
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +3
Query: 6 SARKMKEDAIAQGYRQKSKSPSPI-PKDLQKQPTPPGRRYR--SRSKTPEP 149
SA K A + +SKSP+P K K P P RR R S SK+P P
Sbjct: 309 SASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPP 359
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
R SKS SP PK + PP RR RS S + P P
Sbjct: 392 RSPSKSRSPAPK----REIPPARRRRSPSASKSPPAP 424
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.76
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 48 RQKSKSPSPIPK--DLQKQPTPPGRRYRSRSKTPEPNI 155
+Q+S+SP P + D + +PP R YR R ++ P +
Sbjct: 150 QQRSRSPPPAKRRRDQSRSKSPPRRNYRQRQRSGSPPV 187
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
R++S+SP P+ ++ P+PP RR SRS P
Sbjct: 101 RKRSRSP---PRRTRRSPSPPRRRRISRSPVRRSRSP 134
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
+KS+SPS PK + + P+PP R RS S+ P
Sbjct: 265 RKSRSPSRSPKKVDRSPSPP-RGSRSPSEKGSP 296
>AL132949-11|CAB70104.2| 927|Caenorhabditis elegans Hypothetical
protein Y53F4B.13 protein.
Length = 927
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = +2
Query: 422 QMLPKMGWSAG-GLGASGQGIAEPIS 496
+++ MG AG GLG GQGI+EPI+
Sbjct: 92 RLMAAMGHKAGEGLGKHGQGISEPIA 117
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 42 GYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 158
G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1841 GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 42 GYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 158
G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1841 GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 42 GYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 158
G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1841 GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 42 GYRQKSKSPSPIPKDLQKQPTP----PGRRYRSRSKTPEPNIP 158
G K KSP P++ K PTP PG + +SK+PE P
Sbjct: 1841 GDESKEKSPEK-PEEKPKSPTPKKSPPGSPKKKKSKSPEAEKP 1882
>Z68319-3|CAA92701.1| 339|Caenorhabditis elegans Hypothetical
protein T23G7.3 protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 401 DSTNKGHQMLPKMGWSAG-GLGASGQGIAEPI 493
D +++ KMGWS G GLG + QG A+ +
Sbjct: 25 DDQKLSKKLMEKMGWSEGDGLGRNRQGNADSV 56
>U53141-7|AAA96109.1| 82|Caenorhabditis elegans Hypothetical
protein C14C11.7 protein.
Length = 82
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQKSKSPSPIPKDLQKQPTP 107
++++ED + + Q+S P+P P Q+ P P
Sbjct: 23 KRLREDKVQENVPQQSVQPAPPPPAAQQAPAP 54
>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
C27F2.8 protein.
Length = 1715
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
+ K P+ IP + KQPTP + R+ SKTP
Sbjct: 1348 EQKKPNAIPVERPKQPTP--SKARTPSKTP 1375
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGVGXLERS 331
S PP G + P P A PP P GS P PP+ G PP G R
Sbjct: 279 SPPPPPAGGSPPPPRAGSPPPPPPPRGS---PPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 335
Query: 330 TRR 322
R+
Sbjct: 336 KRQ 338
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGVGXLERS 331
S PP G + P P A PP P GS P PP+ G PP G R
Sbjct: 300 SPPPPPAGGSPPPPRAGSPPPPPPPRGS---PPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 356
Query: 330 TRR 322
R+
Sbjct: 357 KRQ 359
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 4.0
Identities = 21/63 (33%), Positives = 24/63 (38%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGVGXLERS 331
S PP G + P P A PP P GS P PP+ G PP G R
Sbjct: 285 SPPPPPAGGSPPPPRAGSPPPPPPPRGS---PPTGSLPPPQAGGSPPPAGTGSPPPPPRQ 341
Query: 330 TRR 322
R+
Sbjct: 342 KRQ 344
>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
W04A8.7 protein.
Length = 1792
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +2
Query: 446 SAGGLGASGQGIAEPISGGFVEXDK----TNIQGVGVSLNDP 559
S+GG G G GI GG + D + I G LN P
Sbjct: 1373 SSGGAGGGGSGIGGSTGGGITDNDDDDRFSQISGTSSFLNGP 1414
>Z77659-4|CAB01163.1| 507|Caenorhabditis elegans Hypothetical
protein F23B12.5 protein.
Length = 507
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 12 RKMKEDAIAQGYRQKS--KSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
+ K+D + G + K+P P QP+PP + Y++ S IP
Sbjct: 163 KDFKDDGASSGGSAPAAEKAPEPAKPAASSQPSPPAQMYQAPSVPKSAPIP 213
>Z66567-1|CAA91491.1| 887|Caenorhabditis elegans Hypothetical
protein ZK455.1 protein.
Length = 887
Score = 27.5 bits (58), Expect = 9.3
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +2
Query: 368 GGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVS 547
G YP + G DS +GW GG+ A + +PIS V + + VG +
Sbjct: 193 GVLYPDSVVGTDSHTTMIDGSGVLGWGVGGIEAEAVMLGQPIS--MVIPEVIGYELVG-T 249
Query: 548 LNDPYENFRLQTKVQRSSADAG 613
L+D + L + ++ D G
Sbjct: 250 LSDTVTSTDLVLTITKNLRDLG 271
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGV 349
S PP+ G P PP L PI G P +PP G PP GG+
Sbjct: 704 SALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGL 751
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGV 349
S PP+ G P PP L PI G P +PP G PP GG+
Sbjct: 704 SALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGL 751
>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
protein W04A8.7 protein.
Length = 1792
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +2
Query: 446 SAGGLGASGQGIAEPISGGFVEXDK----TNIQGVGVSLNDP 559
S+GG G G GI GG + D + I G LN P
Sbjct: 1373 SSGGAGGGGSGIGGSTGGGITDNDDDDRFSQISGTSSFLNGP 1414
>AL023835-10|CAA19494.2| 691|Caenorhabditis elegans Hypothetical
protein Y37A1B.11 protein.
Length = 691
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 66 PSPIPKDLQKQ-PTPPGRRYRSRSKTPEP 149
PSP P +++ P PP R R TPEP
Sbjct: 536 PSPEPSPVREPTPPPPPREPTPREPTPEP 564
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 9.3
Identities = 19/54 (35%), Positives = 22/54 (40%)
Frame = -1
Query: 510 STKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPPRKLGGV 349
S PP+ G P PP L PI G P +PP G PP GG+
Sbjct: 287 SALPPITGGP------PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGL 334
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,149,204
Number of Sequences: 27780
Number of extensions: 299364
Number of successful extensions: 1099
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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