Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0699
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.5  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    23   3.5  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    23   3.5  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 455 GLGASGQGIAEPISGG 502
           G GASG G AE +S G
Sbjct: 597 GSGASGSGSAENLSSG 612


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 555 IPMKTSDYKQRCSVHQQMQVRALERSS*FPQAKTL 659
           IP    D  Q+CS+     V +      FP+  TL
Sbjct: 392 IPSVKIDEDQKCSIESITSVNSTSSPKPFPRRATL 426


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 318 DRAVWNALXRQHHLVFLVEHIPRLPEV 398
           D  +W+   +   ++ L E+IPR+  V
Sbjct: 85  DVILWDFFVKNARMILLEEYIPRVESV 111


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 318 DRAVWNALXRQHHLVFLVEHIPRLPEV 398
           D  +W+   +   ++ L E+IPR+  V
Sbjct: 59  DVILWDFFVKNARMILLEEYIPRVESV 85


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 208 GKXREKVQEKDEDVPGEVKIKIT**FPRT 294
           GK +E+  +KD+D      IK    FP +
Sbjct: 79  GKPKEETDDKDDDESDNENIKSQKEFPNS 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,834
Number of Sequences: 438
Number of extensions: 4157
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)