Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0699
(678 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp... 50 2e-06
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 48 8e-06
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 48 8e-06
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 40 0.001
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 36 0.025
At1g17070.1 68414.m02077 D111/G-patch domain-containing protein ... 33 0.13
At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product... 31 0.53
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 31 0.70
At2g42330.1 68415.m05239 D111/G-patch domain-containing protein ... 31 0.93
At1g78815.1 68414.m09187 expressed protein contains Pfam profile... 30 1.2
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 30 1.6
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 30 1.6
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 29 2.1
At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase cyc... 29 2.8
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein... 29 2.8
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein... 29 2.8
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein... 29 2.8
At1g31870.1 68414.m03917 expressed protein 29 2.8
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.8
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 29 2.8
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 29 3.7
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 29 3.7
At4g19570.1 68417.m02877 DNAJ heat shock N-terminal domain-conta... 29 3.7
At3g24480.1 68416.m03070 leucine-rich repeat family protein / ex... 29 3.7
At5g38560.1 68418.m04662 protein kinase family protein contains ... 28 4.9
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 6.5
At2g15880.1 68415.m01820 leucine-rich repeat family protein / ex... 28 6.5
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 6.5
At1g61080.1 68414.m06877 proline-rich family protein 28 6.5
At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putat... 27 8.6
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)... 27 8.6
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 27 8.6
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 27 8.6
>At3g52120.1 68416.m05721 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein / D111/G-patch
domain-containing protein contains Pfam profiles
PF01585: G-patch domain, PF01805: Surp module
Length = 443
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/51 (50%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVEXDKTNIQGVGVS 547
I + N GH++L KMGW G G+G+S +G+A+PI G V KTN GVG S
Sbjct: 358 IQADNVGHKLLSKMGWKEGEGIGSSRKGMADPIMAGDV---KTNNLGVGAS 405
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/70 (38%), Positives = 34/70 (48%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRL 577
I S+N G ++L KMGW GLG QGI EPI G + G+G D Y F
Sbjct: 64 ISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSGI----RDRRLGLGKQEEDDY--FTA 117
Query: 578 QTKVQRSSAD 607
+ +QR D
Sbjct: 118 EENIQRKKLD 127
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 47.6 bits (108), Expect = 8e-06
Identities = 27/70 (38%), Positives = 34/70 (48%)
Frame = +2
Query: 398 IDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLNDPYENFRL 577
I S+N G ++L KMGW GLG QGI EPI G + G+G D Y F
Sbjct: 64 ISSSNVGFRLLQKMGWKGKGLGKQEQGITEPIKSGI----RDRRLGLGKQEEDDY--FTA 117
Query: 578 QTKVQRSSAD 607
+ +QR D
Sbjct: 118 EENIQRKKLD 127
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 383 TTSGGIDSTNKGHQMLPKMGWSAG-GLGASGQGIAEPISGGFVE 511
T ID +N G++ML MGW G GLG G G+ EP+ V+
Sbjct: 1019 TEERAIDESNVGNRMLRNMGWHEGSGLGKDGSGMKEPVQAQGVD 1062
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 35.9 bits (79), Expect = 0.025
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +2
Query: 416 GHQMLPKMGW-SAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVSLN--DPYENFRLQTK 586
G +M+ KMG+ GGLG G+GIA+PI V+ K+ G+ S++ DP +
Sbjct: 639 GSKMMAKMGFIDGGGLGKDGKGIAQPIEA--VQRPKSLGLGLDFSIDTEDPSPSSNNNNN 696
Query: 587 VQRS-SADAGK 616
+R+ S+ +GK
Sbjct: 697 AKRNRSSSSGK 707
>At1g17070.1 68414.m02077 D111/G-patch domain-containing protein
Similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 849
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 416 GHQMLPKMGWSAGGLGASGQGIAEPI 493
G ++L KMG+ GGLG + QGI PI
Sbjct: 204 GMKLLEKMGYKGGGLGKNQQGIVAPI 229
>At2g20960.1 68415.m02479 expressed protein pEARLI 4 gene product
[Arabidopsis thaliana] GI:871782
Length = 748
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 60 KSPSPIPKDLQKQPT---PPGRRYRSRSKTPEPN 152
+SP P K + QPT P R + RSKTPEP+
Sbjct: 308 RSPGPRSKTPEPQPTYFEPSSRTPKQRSKTPEPS 341
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 31.1 bits (67), Expect = 0.70
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 42 GYRQKSKSPSPIPKDLQKQPTPPGRR-YRSRSKTPEP 149
G R++S+S S P +K PT GRR Y R+++P P
Sbjct: 118 GGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPPP 154
>At2g42330.1 68415.m05239 D111/G-patch domain-containing protein
similar to SP|Q9ERA6 Tuftelin-interacting protein 11
{Mus musculus}; contains Pfam profile PF01585: G-patch
domain
Length = 752
Score = 30.7 bits (66), Expect = 0.93
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +2
Query: 389 SGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPI 493
SGGI G ++L KMG+ GLG + QGI PI
Sbjct: 103 SGGI-----GMKLLEKMGYKGRGLGKNQQGIVAPI 132
>At1g78815.1 68414.m09187 expressed protein contains Pfam profile
PF04852: Protein of unknown function (DUF640)
Length = 195
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 21 KEDAIAQGYRQKSKSPSPIPKDLQKQPTPPG-RRYRSRSK 137
K IA+G Q P P P Q P PP RY S+ +
Sbjct: 7 KGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKR 46
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 39 QGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
+ Y +++SP P P+ ++ P+PP R RS S++P P
Sbjct: 144 RSYSPRARSPPP-PR--RRSPSPPPARGRSYSRSPPP 177
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEP 149
R++SKS S P ++ P+ R Y R+++P P
Sbjct: 122 RRRSKSRSRTPPRYRRSPSYGRRSYSPRARSPPP 155
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 422 QMLPKMGWSAG-GLGASGQGIAEPI 493
+M+ MG+ G GLG SGQGI PI
Sbjct: 306 KMMASMGYREGMGLGVSGQGILNPI 330
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRS 128
++ +SPSP P ++ P+PP RR+RS
Sbjct: 318 RRRRSPSP-PARRRRSPSPPARRHRS 342
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRS-----RSKTPEP 149
++ +SP+P P ++ P+PP RR+RS R ++P P
Sbjct: 338 RRHRSPTP-PARQRRSPSPPARRHRSPPPARRRRSPSP 374
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRSRS 134
++ +SPSP P ++ P+PP RR RS S
Sbjct: 308 RRRRSPSP-PARRRRSPSPPARRRRSPS 334
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRSRS 134
++ +SPSP P ++ P+PP RR RS S
Sbjct: 367 RRRRSPSP-PARRRRSPSPPARRRRSPS 393
Score = 28.3 bits (60), Expect = 4.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 51 QKSKSPSPIPKDLQKQPTPPGRRYRSRS 134
++ +SPSP P + PTPP R+ RS S
Sbjct: 328 RRRRSPSP-PARRHRSPTPPARQRRSPS 354
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRS 134
+ + SP P ++ P+PP RR RS S
Sbjct: 298 EGRRQSPAPSRRRRSPSPPARRRRSPS 324
>At4g32420.1 68417.m04615 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein weak similarity to
CARS-Cyp [Homo sapiens] GI:1117968; contains Pfam
profile PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 837
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 39 QGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPN 152
+G R+ S+SP P + + +PP R RS S++ PN
Sbjct: 637 RGRRRISRSPVPARRRSVRPRSPPPDRRRSLSRSASPN 674
>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 106 HQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENT 201
HQE++ DH H + HDH H H+ N+
Sbjct: 174 HQEQEQDHHHHHQYISTNNDHDH-HHHIDSNS 204
>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 106 HQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENT 201
HQE++ DH H + HDH H H+ N+
Sbjct: 174 HQEQEQDHHHHHQYISTNNDHDH-HHHIDSNS 204
>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
similar to OsNAC7 protein (GI:6730944) [Oryza sativa];
contains weak hit to Pfam PF02365 : No apical meristem
(NAM) protein
Length = 371
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 106 HQEEDTDHGVKHPNLIYQ*SHDHVHSHLKENT 201
HQE++ DH H + HDH H H+ N+
Sbjct: 174 HQEQEQDHHHHHQYISTNNDHDH-HHHIDSNS 204
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +3
Query: 39 QGYRQKSKSPSPIPKD-----LQKQPTPPGRRYRSRSKTPEPN 152
Q R S SP P P+ + +PP RR R S +PEPN
Sbjct: 122 QRTRNDSPSPEPGPRRSVADRVDTDMSPPRRRKRHNSPSPEPN 164
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
KS S SP P+ + P+P R RSRS P
Sbjct: 247 KSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 54 KSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
KS S SP P+ + P+P R RSRS P
Sbjct: 247 KSTSRSPGPRSKSRSPSPRRSRSRSRSPLP 276
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
R++S+SP P K + + PP + R RS++ + P
Sbjct: 281 RRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSP 317
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +3
Query: 48 RQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
R++S+SP P K + + PP + R RS++ + P
Sbjct: 281 RRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSP 317
>At4g19570.1 68417.m02877 DNAJ heat shock N-terminal
domain-containing protein low similarity to SP|Q9QYI4
DnaJ homolog subfamily B member 12 {Mus musculus};
contains Pfam profile PF00226: DnaJ domain
Length = 558
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
Frame = +3
Query: 12 RKMKEDAIAQ---GYRQKSKSPSPIPKDLQKQ-----PTPPGR---RYRSRSKTPEPNIP 158
+K K + + Q G ++ +S +P P + K PTPP + R R PEP+IP
Sbjct: 128 QKRKSNQVKQRTSGMQKPKRSSTPKPTESDKPASSYGPTPPPEPRPKRRPRPNIPEPDIP 187
Query: 159 M 161
M
Sbjct: 188 M 188
>At3g24480.1 68416.m03070 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 494
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -1
Query: 513 ISTKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPP 367
+ PP++ A+P P P PP P+ P V S PP Y+PP
Sbjct: 401 VKPSPPIV--ALPPPPPPSPPLPPPVYSPPPSPP-VFSPPPSPPVYSPP 446
>At5g38560.1 68418.m04662 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 681
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -1
Query: 516 SISTKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPP 367
S +T PP + + P AP P P P+ S PP VV PP
Sbjct: 17 SSTTAPPPLQTQPTTPSAPPPVTPPPSPPQSPPPVVSSSPPPPVVSSPPP 66
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -2
Query: 539 QHLEYWSCXSLRNRH**VLQYPGLKHQGPLHSNPSXVAFDALYL*NLYL 393
Q+L + L +RH +L+ H+ LH NP + F AL L LYL
Sbjct: 643 QYLHHRLRHILPSRHRHLLRRKHTIHRNHLHHNPRNLQFTALPLLPLYL 691
>At2g15880.1 68415.m01820 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 727
Score = 27.9 bits (59), Expect = 6.5
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 24 EDAIAQGYRQK--SKSPSPIPKDLQKQPTPPGRRYRSRSKTPEPNIP 158
+D A G Q SKSPSP+P +P PP ++P+PN P
Sbjct: 382 KDKCAGGSSQATPSKSPSPVPTRPVHKPQPP-------KESPQPNDP 421
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 522 VLSISTKPPLIGSAIPWPEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPP 367
V S +T PP +A P AP P P + P + PP V +PP
Sbjct: 32 VTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPP 83
>At1g61080.1 68414.m06877 proline-rich family protein
Length = 907
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Frame = -1
Query: 501 PPLIGSAIPW----PEAPRPPALQPIXGSI*CPLFVESIPPEVVGYAPP 367
PPL + +P P P PPA +P+ GS P +P + PP
Sbjct: 478 PPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPP 526
>At4g26970.1 68417.m03881 aconitate hydratase, cytoplasmic, putative
/ citrate hydro-lyase/aconitase, putative strong
similarity to SP|P49608 Aconitate hydratase, cytoplasmic
(EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)
{Cucurbita maxima}; contains Pfam profiles PF00330:
Aconitase family (aconitate hydratase), PF00694:
Aconitase C-terminal domain
Length = 995
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +2
Query: 368 GGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPIS 496
G YP + G DS L GW GG+ A + +P+S
Sbjct: 295 GFLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMS 337
>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
identical to SP|O65607 DNA mismatch repair protein MSH3
(AtMsh3) {Arabidopsis thaliana}
Length = 1081
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 15 KMKEDAIAQGYRQKSKSPSPIPKDLQKQPTPPGRRYRSRSKTP 143
K K+ I++ + K KSP+ P + + TPP + + S +P
Sbjct: 3 KQKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKISATVSFSP 45
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 27.5 bits (58), Expect = 8.6
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 66 PSPIPKDLQKQPTPPG 113
PSP+P D ++P PPG
Sbjct: 129 PSPLPLDYTQEPPPPG 144
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/60 (31%), Positives = 22/60 (36%)
Frame = +2
Query: 368 GGAYPTTSGGIDSTNKGHQMLPKMGWSAGGLGASGQGIAEPISGGFVEXDKTNIQGVGVS 547
G A SGG + G G +A G ASG A SGG E + G S
Sbjct: 229 GDAAGADSGGAAGADSGGAASADSGGAAAGETASGGAAAADTSGGSAETGGESASGGAAS 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,540,949
Number of Sequences: 28952
Number of extensions: 293963
Number of successful extensions: 1141
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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