Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0698
         (679 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    27   0.19 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    25   0.75 
AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory recept...    23   1.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   5.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.0  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 472 VELNYAIPTLMYWLSGPCKLIFDTLSETLQHTWSARIGCSFPTFTSSID 326
           V+L+Y +P+L  +L        + ++  L  +W +  G + P + SSID
Sbjct: 190 VDLSYHVPSLSKYLD-----FINVMAYDLHGSWESVTGQNAPLYASSID 233


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -3

Query: 389 TATHMVCAYRVLFSYIHIFN*FKIACIFTSVL 294
           + T  VC    ++++ HIF  F I C F +++
Sbjct: 57  SVTLHVCFNSYMYAFTHIFFFFAICCDFIALI 88


>AM292349-1|CAL23161.1|  248|Tribolium castaneum gustatory receptor
           candidate 28 protein.
          Length = 248

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 205 NEFHFISFYYPLCFIS 252
           N F F+ FYYP+  +S
Sbjct: 105 NVFDFVHFYYPVATMS 120


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/15 (33%), Positives = 11/15 (73%)
 Frame = -2

Query: 318 CLYFYFCAIFMTRVY 274
           C+Y+++CA  +  V+
Sbjct: 145 CIYYFYCAFIIFTVH 159



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 4/11 (36%), Positives = 10/11 (90%)
 Frame = -2

Query: 318 CLYFYFCAIFM 286
           C+Y+++CA+ +
Sbjct: 284 CIYYFYCALII 294


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 SFHFILLPIVFYLL 254
           SF++ ++PI+F++L
Sbjct: 946 SFYYNIIPILFFML 959


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 SFHFILLPIVFYLL 254
           SF++ ++PI+F++L
Sbjct: 946 SFYYNIIPILFFML 959


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 SFHFILLPIVFYLL 254
           SF++ ++PI+F++L
Sbjct: 946 SFYYNIIPILFFML 959


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/14 (42%), Positives = 13/14 (92%)
 Frame = +3

Query: 213 SFHFILLPIVFYLL 254
           SF++ ++PI+F++L
Sbjct: 946 SFYYNIIPILFFML 959


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,564
Number of Sequences: 336
Number of extensions: 2628
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)