Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0698
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    27   1.9  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    26   5.8  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   7.6  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 585 FDNAAISKKNRRKKVTMTTKQ 647
           F+N  +S K RRKK+T  TK+
Sbjct: 590 FENYKVSPKGRRKKITKHTKK 610


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 222 FILLPIVFYLLNVTSRLNIHV-S*K*HRSKNTSNFKSIEDVNVGKEH 359
           FILLPI+F ++++  RL   + S    +S + S+    +D ++  E+
Sbjct: 488 FILLPIIFSMISLKYRLRQFIYSITLRKSSSASSSDDFDDSSLNSEN 534


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 478 YYVELNYAIPTLMYWLSGPCKLIFDTLSETLQHTWSA 368
           +Y+ LN  +   +  +  P K+I +T ++ +Q  W A
Sbjct: 586 FYIHLNSILNISISEVHSPIKIIVNTPTQNMQLPWQA 622


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,337,901
Number of Sequences: 5004
Number of extensions: 43479
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)