Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0698
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    29   3.0  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    29   3.0  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        29   3.0  
U40419-5|AAA81426.1|  165|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 578  LDFRQRSNFQKKPSKKSHHDDEAMFR 655
            +D  + S FQK+PS+K + DD++  R
Sbjct: 1121 VDLFESSTFQKRPSQKKNRDDDSCSR 1146


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 578  LDFRQRSNFQKKPSKKSHHDDEAMFR 655
            +D  + S FQK+PS+K + DD++  R
Sbjct: 1123 VDLFESSTFQKRPSQKKNRDDDSCSR 1148


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 578  LDFRQRSNFQKKPSKKSHHDDEAMFR 655
            +D  + S FQK+PS+K + DD++  R
Sbjct: 1123 VDLFESSTFQKRPSQKKNRDDDSCSR 1148


>U40419-5|AAA81426.1|  165|Caenorhabditis elegans Hypothetical
           protein C27F2.6 protein.
          Length = 165

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -1

Query: 481 IYYVELNYAIPTLMYWLSGPCK--LIFDTLSETLQHTWSARI 362
           I+ +     +PT + W SG C   LI D LS  + + + AR+
Sbjct: 59  IFGISFGDIVPTNLVWFSGYCLFFLISDVLSNHIFYFFQARV 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,738,738
Number of Sequences: 27780
Number of extensions: 238690
Number of successful extensions: 472
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)