Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0698
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26740.2 68418.m03164 expressed protein contains Pfam profile...    30   1.6  
At5g26740.1 68418.m03163 expressed protein contains Pfam profile...    30   1.6  
At5g15580.1 68418.m01824 expressed protein unknown protein F14P3...    29   2.1  
At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM dom...    29   2.1  
At2g03380.1 68415.m00297 pentatricopeptide (PPR) repeat-containi...    28   6.5  

>At5g26740.2 68418.m03164 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -1

Query: 553 LPQXYYLNFLKLMF--NSEYSTAT*IIYYVELNYAIPTL-MYWLSGPCKLIFDTLSETLQ 383
           +P   +++FL L+   +S Y  +   +Y   + Y   +L + W+ GP  ++      +L+
Sbjct: 51  VPVYAFMSFLSLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRSLK 110

Query: 382 HTWSARIGCSFPTFT 338
            +WS  + C FP  T
Sbjct: 111 PSWSL-MTCCFPPLT 124


>At5g26740.1 68418.m03163 expressed protein contains Pfam profile
           PF03619: Domain of unknown function
          Length = 422

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -1

Query: 553 LPQXYYLNFLKLMF--NSEYSTAT*IIYYVELNYAIPTL-MYWLSGPCKLIFDTLSETLQ 383
           +P   +++FL L+   +S Y  +   +Y   + Y   +L + W+ GP  ++      +L+
Sbjct: 51  VPVYAFMSFLSLVLPKSSIYFDSIREVYEAWVIYNFLSLCLAWVGGPGSVVLSLSGRSLK 110

Query: 382 HTWSARIGCSFPTFT 338
            +WS  + C FP  T
Sbjct: 111 PSWSL-MTCCFPPLT 124


>At5g15580.1 68418.m01824 expressed protein unknown protein F14P3.18
           - Arabidopsis thaliana, EMBL:AC009755
          Length = 927

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -1

Query: 418 KLIFDTLSETLQHTWSARIGCS-FPTFTSSI 329
           KLIFDT++E L H ++A  GC+  P+ T SI
Sbjct: 797 KLIFDTINEILAHRFAAE-GCTKQPSITLSI 826


>At3g59660.1 68416.m06656 C2 domain-containing protein / GRAM
           domain-containing protein low similarity to GLUT4
           vesicle protein [Rattus norvegicus] GI:4193489; contains
           Pfam profiles PF00168: C2 domain, PF02893: GRAM domain
          Length = 594

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = -1

Query: 472 VELNYAIPTLMYWLSGPCKLIFDTL-SETLQHTWSARIGCSF 350
           V L+   PT+++   GP + IFD L  E ++H++S  +  SF
Sbjct: 214 VTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCALERSF 255


>At2g03380.1 68415.m00297 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 689

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 418 KLIFDTLSETLQHTWSARIG 359
           +LIFDT+ E    TWSA IG
Sbjct: 500 RLIFDTIEEKNTITWSAMIG 519


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,414,670
Number of Sequences: 28952
Number of extensions: 201095
Number of successful extensions: 399
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)