Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    32   0.090
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    29   0.84 
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    27   3.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    26   4.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   5.9  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.8  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   7.8  

>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 239 FYYRLTKLSIPVTFFFPDLFTRSKPEPLASLIMHLTVLTDVFVASEVCF 385
           ++Y + K+S P+ FF+ + +   KP      + +   L DVF   E C+
Sbjct: 619 YHYLIVKVSCPIMFFYLNNWYSVKPSSFTKGLNNKPSLEDVFSNLETCY 667


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
 Frame = +1

Query: 40  RSNRYYFFQLSASDYFL--FFFHLKPSSFIIRRKLHSEPLKCISSLKFSKSFYGTEFRCL 213
           +S+      LS  +YFL  FFF   PS  I     HS   K +S++ FSK  +      L
Sbjct: 247 KSHHQASIHLSQINYFLWFFFFFSFPSYIIKYLMSHSRRSKLLSAV-FSKKSFLIVSVLL 305

Query: 214 LCSYYDYIF 240
           L ++++ IF
Sbjct: 306 LIAHFNTIF 314


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 263 SIPVTFFFPDLFTRSKPEPLASLIMHLTVLTDVFVASEVCFTFSIISFFP 412
           S  V   FP L + S  +     + HL  L D+ + S +  + S+++F P
Sbjct: 615 STGVIKLFPALLSISPADTWKPFLPHLVKLFDIAIPSNLSQSLSVLNFGP 664


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 364 CCFRSLFYFFHNIILPLFYNEAIYVVHNFSTLSFEYYT 477
           CC  + F F+  I+LP  Y +  + V +F  ++   YT
Sbjct: 349 CCIFTSFVFWIWIVLPGLYYQNYWQVAHFPIMTNSIYT 386


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 43   SNRYYFFQLSASDYFLFFFH 102
            SNR +   LS +D+FL+F H
Sbjct: 1685 SNRDFIKMLSGNDFFLYFGH 1704


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/43 (20%), Positives = 28/43 (65%)
 Frame = +1

Query: 430 IYVVHNFSTLSFEYYTSLSRHSVFFIKINKHSTNSNGNKVNKQ 558
           ++V  +     ++ + + SR++++FI+++K + NSN  +++ +
Sbjct: 159 VHVYDHLFVRHWDRWNTGSRNTLYFIELDKKTENSNYFEISSE 201


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 385 YFFHNIILPLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFIKINKHSTNSNGNKVNKQL* 564
           Y F  ++L L     +++  +FS     +Y  L+RH    I + +   N   NK   ++ 
Sbjct: 382 YIFIGVLLGLIGVIGLFICLHFSGAMNGFYRLLNRHG---IPVQERIVNIGPNKPENRVT 438

Query: 565 QNLLTINNDRLFT 603
           + +L     R+F+
Sbjct: 439 KEMLDTLPVRMFS 451


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,809
Number of Sequences: 5004
Number of extensions: 58157
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)