Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0853 + 7996492-7996667,7996751-7997655,7998533-7998624,799...    29   3.5  
02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    29   3.5  
01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328     28   6.2  

>12_01_0853 +
           7996492-7996667,7996751-7997655,7998533-7998624,
           7998751-7998819,7998949-7999047
          Length = 446

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +2

Query: 206 AACYVVIMITSFY--YRLTKLSIPVTFFFPDLFTRSKPE-PLASLIMHLTVLTDVFVASE 376
           A  +VV+ +   Y  Y +    +  TF    L  R KP  PL  +   L VL  +FVA  
Sbjct: 312 ANMFVVVHVVGSYQIYAMPVFDMLETFLVKKL--RFKPGMPLRLIARSLYVLFTMFVAIA 369

Query: 377 VCFTFSIISFFPCFIMKQYTSYTIFLPFLL 466
           V F   ++ FF  F    +   T FLP ++
Sbjct: 370 VPFFGGLLGFFGGF---AFAPTTYFLPCIM 396


>02_01_0297 +
           1986422-1986570,1986960-1987065,1987188-1987464,
           1987805-1988305,1989010-1990016,1990131-1990781,
           1991337-1991633,1991735-1992013,1993070-1993198,
           1993291-1993491,1993651-1993793,1993878-1994190,
           1994349-1994488,1995320-1995398,1995484-1995753,
           1996208-1996425,1996521-1996632
          Length = 1623

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 411 GKNDIMEKVKQT-SEATKTSVSTVRCIINEAKGSGLLLVKRSGKKKVTGM 265
           G N+I   VKQ      K +  T   + NEA  S  + V +SGK K+ G+
Sbjct: 824 GSNEIKTHVKQEIMPIDKETSETAPEVKNEANDSTDITVSKSGKPKIKGV 873


>01_05_0391 + 21726499-21726554,21726921-21727158,21727275-21727328
          Length = 115

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +2

Query: 599 SLYASVLLGASGTRARCGTQ--VRLDSXNN 682
           S  AS L+ ++G+R+ CGTQ   R DS NN
Sbjct: 84  SRLASSLVSSAGSRSFCGTQSIKRFDSGNN 113


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,499,982
Number of Sequences: 37544
Number of extensions: 289118
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)