Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)         32   0.39 
SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)                30   2.1  
SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)          30   2.1  
SB_22425| Best HMM Match : PigN (HMM E-Value=0)                        28   6.3  
SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)                      28   6.3  

>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
          Length = 623

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 18/78 (23%), Positives = 39/78 (50%)
 Frame = -1

Query: 253 QSVIKRCNHNNYITSSETPYRRKTSKILKKIYILMARNEVYDEL*KS*ASDEKKTENNRK 74
           +S + R  H  +I  S TPYR+K    + K    +A + +++++     + +K  E++  
Sbjct: 204 ESGVSRTAHI-FINESLTPYRKKLFSRISKYRRDIANSNMHNDIFNLLTNPDKSDESDSD 262

Query: 73  LIIEKSNIDYYESNIFKK 20
           L++   + +Y+  N   K
Sbjct: 263 LMLSSPSSEYFSINKLNK 280


>SB_36364| Best HMM Match : Ion_trans (HMM E-Value=0.82)
          Length = 318

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -2

Query: 381 QTSEATKTSVSTVRCIINEAKGSGLL 304
           +T +AT+T ++  R +INE +G GLL
Sbjct: 194 KTRQATRTVLNNARDVINELRGGGLL 219


>SB_39781| Best HMM Match : cNMP_binding (HMM E-Value=2.2e-19)
          Length = 1211

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 296 FTRSKPEPLASLIMHLTVLTDVFVASEVCFTFSIISFFPCFIMKQYTSYTIFLP 457
           F+ S P P AS +      T + ++ + CFTF  +S  PCF     +    F P
Sbjct: 512 FSPSNPSP-ASHLSPKPCFTSLTLSPKPCFTFLTLSTKPCFTSLTLSPKPCFTP 564



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +2

Query: 305 SKPEPLASLIMHLTVLTDVFVASEVCFTFSIISFFPCFIMKQYTSYTIFLPFLLNTTP 478
           S+P P A+ +      T V ++ + CFTF  +S  PCF     ++   F P  L+  P
Sbjct: 678 SQPCP-ATHLSPKPCFTFVTLSPKPCFTFLTLSTKPCFTPLTLSTKLCFTPLTLSPKP 734


>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 392 SIISFFPCFIMKQYTSYTIFLPFLLNTTPVCRGIVYFL 505
           SI SF P  +   Y   T+F PFL+ T  +C+ +V F+
Sbjct: 790 SINSFDPASV---YCFMTVFSPFLMGTLLLCKVVVPFV 824


>SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)
          Length = 344

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 310 LAPREKIREEESYRNG*FRQSVIKRCNHNNYITSSETPYRRKTSKILKKIYILMARNEVY 131
           L P  K+ EEE+      +  ++K   + N     +  YR K   IL  +Y LM   + +
Sbjct: 10  LIPIYKLTEEEAKPKEENKSILLKMLKNKNLNEFIKESYREKNIVILDSLYKLMISPKAH 69

Query: 130 DEL 122
           D L
Sbjct: 70  DAL 72


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,079,316
Number of Sequences: 59808
Number of extensions: 379130
Number of successful extensions: 1442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1439
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)