Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical pr...    34   0.084
Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical p...    33   0.15 
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   0.60 
CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical ...    31   0.60 
AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase pr...    31   0.79 
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    29   2.4  
AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protei...    29   3.2  
AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal chem...    29   3.2  
Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical pr...    27   9.7  
Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical
           protein T05A12.3 protein.
          Length = 655

 Score = 34.3 bits (75), Expect = 0.084
 Identities = 25/90 (27%), Positives = 41/90 (45%)
 Frame = -1

Query: 319 RLWLAPREKIREEESYRNG*FRQSVIKRCNHNNYITSSETPYRRKTSKILKKIYILMARN 140
           R W    ++  E + YRNG ++    K+ N      + + P+R  TSK    +  L +R+
Sbjct: 161 RKWKEEEDQDMEADRYRNGVYKALAAKQKNEGALRATVQGPHRVSTSK-SNSLAGLCSRH 219

Query: 139 EVYDEL*KS*ASDEKKTENNRKLIIEKSNI 50
           E   +   S   D KK    R+ ++EK  I
Sbjct: 220 ERTRDT-FSPPKDGKKVPERREPVVEKKKI 248


>Z37092-11|CAA85461.2|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.13 protein.
          Length = 334

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +2

Query: 368 ASEVCFTFSIISFFPCFIMKQYTSYTIFLPFLLNTTPVCRGIVYFL*KSTNTQQIAM 538
           +S+  F  S+  FF C I   +T   +FL F LN +P+  G+V  L  +T    IA+
Sbjct: 238 SSQAIFFLSMSQFFACLIYSVFTK--VFLEFQLNLSPLQSGLVLALSYTTPYACIAI 292


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 406 LPLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFIKINKH 522
           LPLF+N + ++   F +  F Y+TS +  S   I++ +H
Sbjct: 647 LPLFWNNSTHLYQYFDSRGFSYFTSPNHLSAHGIELVRH 685


>CU457743-1|CAM36364.1|  692|Caenorhabditis elegans Hypothetical
           protein K09E10.1 protein.
          Length = 692

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 406 LPLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFIKINKH 522
           LPLF+N + ++   F +  F Y+TS +  S   I++ +H
Sbjct: 644 LPLFWNNSTHLYQYFDSRGFSYFTSPNHLSAHGIELVRH 682


>AF003130-8|AAB54130.2|  611|Caenorhabditis elegans Pip kinase
           protein 1 protein.
          Length = 611

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +1

Query: 31  YSIRSNRYYFFQLSASDYFLFFFHLKPSSFIIRRKLHSEPLKCISSLKFSKSFY 192
           +S    R+  +   A  YF   FH+KP+ F+  R + +EPLK +S+   S S +
Sbjct: 135 HSFGDFRFRTYAPIAFRYFRNLFHIKPADFL--RSICTEPLKELSNAGASGSIF 186


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +2

Query: 215 YVVIMITSFYYRLTKLSIPVTFFFPDLFTRSKPEPLASLIMHLTVLTDVFVASEVCFTFS 394
           Y++    SF+  L  +   + F    +F       L  L++   + T +F AS +CFTF 
Sbjct: 21  YMIAQFWSFFVSLLAMPSLIFFMVEKVFKLPFHGNLKFLLVSYFIGTFLF-ASIICFTFG 79

Query: 395 IISFFPCFI 421
              F P F+
Sbjct: 80  YHFFVPFFV 88


>AJ277649-1|CAB90211.1|  917|Caenorhabditis elegans CHE-14 protein
           protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 359 VFVASEVCFT-FSIISFFPCFIMKQYTSYTIFLPFLLNTTPVCRGIVYFL 505
           +F    V F  F ++SF P F++ QY  +  F  F      V   ++Y L
Sbjct: 449 LFAGVTVIFNYFMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLLYVL 498


>AF067618-5|AAC19198.2|  917|Caenorhabditis elegans Abnormal
           chemotaxis protein 14 protein.
          Length = 917

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +2

Query: 359 VFVASEVCFT-FSIISFFPCFIMKQYTSYTIFLPFLLNTTPVCRGIVYFL 505
           +F    V F  F ++SF P F++ QY  +  F  F      V   ++Y L
Sbjct: 449 LFAGVTVIFNYFMVVSFLPAFLLIQYRHFDCFTGFKFPYRSVLSHLLYVL 498


>Z99278-6|CAD59170.1|  276|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5b protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +1

Query: 367 CFRSLFYFFHNIILPLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFI 507
           CF SL  F HN+ L L  N  I+       L F  +T+    S FFI
Sbjct: 152 CFPSLLNFPHNLFLSLVSNSMIFSYF----LEFSLFTNFVIFSNFFI 194


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical
           protein C27F2.8 protein.
          Length = 1715

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 409 PLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFIKINKHS 525
           P F N  IY+  N ST +    T   R +V  I ++K+S
Sbjct: 425 PTFDNSTIYLHTNVSTFNLSLSTYTGRMNVELISVDKNS 463


>Z81460-5|CAB03832.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 160 ISSLKFSKSFYGTEFRCLLCSYYDYIFLLQIDETIHSGNFLLP*SFHEEQARAFSFVNNA 339
           +++LKF +   G  ++  +CS YDY   + +D    +   +   +F  E    F  +++ 
Sbjct: 268 MTTLKFDEGVVGKAYKGTMCS-YDYSGGIYVDHNNDTVETVA--TFAHELGHTFG-MDHD 323

Query: 340 PNSTH*CFC 366
           PN    C+C
Sbjct: 324 PNDKDVCYC 332


>Z70209-3|CAA94147.1|  952|Caenorhabditis elegans Hypothetical
           protein C04A11.4 protein.
          Length = 952

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +1

Query: 160 ISSLKFSKSFYGTEFRCLLCSYYDYIFLLQIDETIHSGNFLLP*SFHEEQARAFSFVNNA 339
           +++LKF +   G  ++  +CS YDY   + +D    +   +   +F  E    F  +++ 
Sbjct: 268 MTTLKFDEGVVGKAYKGTMCS-YDYSGGIYVDHNNDTVETVA--TFAHELGHTFG-MDHD 323

Query: 340 PNSTH*CFC 366
           PN    C+C
Sbjct: 324 PNDKDVCYC 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,469
Number of Sequences: 27780
Number of extensions: 312125
Number of successful extensions: 936
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)