Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.91 
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   1.2  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.8  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   2.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/49 (20%), Positives = 26/49 (53%)
 Frame = +1

Query: 400 IILPLFYNEAIYVVHNFSTLSFEYYTSLSRHSVFFIKINKHSTNSNGNK 546
           I+L +FY   ++ +   +    +YY +L+   +++I   ++    +G+K
Sbjct: 21  IVLLIFYGSIMFSMTQVNKEECDYYQNLNLGEIYYIYNPRYPLPYSGSK 69


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 508 KINKHSTNSNGNKVNKQL*QNLLTI 582
           K N ++ N N N  NK+L  N++ I
Sbjct: 95  KYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 508 KINKHSTNSNGNKVNKQL*QNLLTI 582
           K N ++ N N N  NK+L  N++ I
Sbjct: 95  KYNYNNNNYNNNNYNKKLYYNIINI 119


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +1

Query: 142 SEPLKCISSLKFSKSFYGTEFRCLLCSYY-------DYIFLLQIDETIHSGNF 279
           S+  K ISSL  + ++    ++ L C+ Y       +YI  + I   I+ GNF
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +1

Query: 142 SEPLKCISSLKFSKSFYGTEFRCLLCSYY-------DYIFLLQIDETIHSGNF 279
           S+  K ISSL  + ++    ++ L C+ Y       +YI  + I   I+ GNF
Sbjct: 76  SKEHKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPVPIYCGNF 128


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 241 KRCNHNNYITSSETPYRRKTSKILKKIYIL 152
           K  N+NNY   +   Y     K+  K YI+
Sbjct: 323 KYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 241 KRCNHNNYITSSETPYRRKTSKILKKIYILMA 146
           KR  HN      E P  ++   +L +I I++A
Sbjct: 359 KRPMHNVVYRPGENPVTQRLPAVLSRIGIILA 390


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 241 KRCNHNNYITSSETPYRRKTSKILKKIY 158
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -1

Query: 241 KRCNHNNYITSSETPYRRKTSKILKKIY 158
           K  N+NNY  +    Y    +   KK+Y
Sbjct: 90  KYSNYNNYNNNYNNNYNNNYNNNYKKLY 117


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 319 RLWLAPREKIREEESYRN 266
           R ++ P+E+++E+  Y N
Sbjct: 293 RKYIIPKEQVKEDSLYTN 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,543
Number of Sequences: 438
Number of extensions: 4459
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)