Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0697
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13760.1 68418.m01604 expressed protein similar to unknown pr...    28   5.1  
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co...    28   6.8  

>At5g13760.1 68418.m01604 expressed protein similar to unknown
           protein (gb AAF63775.1)
          Length = 569

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 350 LTDVFVASEVCFTFSIISFFPCFIMKQYTSYTIFLPF 460
           + D  + S +CF   I S   C I+    ++T++ PF
Sbjct: 459 IVDADITSSICFLTGICSGCVCLIVAAAWTHTVYKPF 495


>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
           contains Pfam profile: PF00534 Glycosyl transferases
           group 1
          Length = 981

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -2

Query: 504 KKYTMPRQTGVVFKRKGRKIVYDVYCFIIKQGK-NDIMEKVKQTSEAT 364
           +KY   R TG +F ++  K++  V   +I +GK + + +K+    + T
Sbjct: 452 RKYVDDRVTGYLFPKQNLKVLSQVVLEVITEGKISPLAQKIAMMGKTT 499


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,429,462
Number of Sequences: 28952
Number of extensions: 266780
Number of successful extensions: 635
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)