Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0696
(679 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17; Eukary... 140 2e-32
UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209; Eukar... 130 3e-29
UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genom... 124 2e-27
UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2; Dictyos... 112 7e-24
UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein; ... 107 2e-22
UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep: An... 92 1e-17
UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1; Tet... 88 2e-16
UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3; ... 86 6e-16
UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal ... 86 6e-16
UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168, w... 82 1e-14
UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia asia... 79 7e-14
UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal ... 77 3e-13
UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n... 76 7e-13
UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1; Encepha... 66 7e-10
UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lambl... 54 3e-06
UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4; ... 52 1e-05
UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960... 51 3e-05
UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S r... 50 4e-05
UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillar... 48 3e-04
UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12; Archa... 41 0.032
UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6; Euryar... 37 0.39
UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1; Methanocor... 36 0.91
UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2; enviro... 35 1.6
UniRef50_A1CC11 Cluster: C6 transcription factor, putative; n=5;... 35 2.1
UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whol... 34 3.7
UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1; Archae... 34 3.7
UniRef50_A4TIH3 Cluster: PTS permease protein; n=11; Gammaproteo... 33 4.8
UniRef50_Q119K9 Cluster: Putative uncharacterized protein precur... 33 6.4
UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5; Cyano... 33 6.4
UniRef50_Q22Y97 Cluster: TPR Domain containing protein; n=1; Tet... 33 8.4
>UniRef50_P52813 Cluster: 40S ribosomal protein S3a; n=17;
Eukaryota|Rep: 40S ribosomal protein S3a - Anopheles
gambiae (African malaria mosquito)
Length = 269
Score = 140 bits (340), Expect = 2e-32
Identities = 67/83 (80%), Positives = 75/83 (90%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VNRTQGTKIAS+GLKGRVFEVSLADLQ + DAERSFRKF+L+AE V GR+VL NFHGM L
Sbjct: 49 VNRTQGTKIASDGLKGRVFEVSLADLQNEPDAERSFRKFKLVAESVNGRDVLTNFHGMAL 108
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR MVKKWQTLIE ++DV+
Sbjct: 109 TTDKLRSMVKKWQTLIECSVDVK 131
Score = 134 bits (323), Expect = 2e-30
Identities = 61/94 (64%), Positives = 77/94 (81%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDG++LRVFCIGFT KDS+SQRKTCYAQH+Q++ IR KM II R++T+++L+ VV K
Sbjct: 131 KTTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEK 190
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
L+PDSIAKDIEKAC +YPL DV I + K + P
Sbjct: 191 LLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKP 224
Score = 47.2 bits (107), Expect = 4e-04
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 6/50 (12%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELHXXXXXXXXXXXDKS------ERPEGYEPPV 640
RKVKVLK+PRF++S LMELH + +RPEGYEPPV
Sbjct: 216 RKVKVLKKPRFDLSSLMELHGDGGGKAAEVSTGAASGVVVDRPEGYEPPV 265
>UniRef50_P61247 Cluster: 40S ribosomal protein S3a; n=209;
Eukaryota|Rep: 40S ribosomal protein S3a - Homo sapiens
(Human)
Length = 264
Score = 130 bits (314), Expect = 3e-29
Identities = 61/94 (64%), Positives = 73/94 (77%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY+LR+FC+GFT K + RKT YAQH QVR IRKKM EI+TR+V ++L+EVVNK
Sbjct: 128 KTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LIPDSI KDIEKAC IYPL DV + + K + P
Sbjct: 188 LIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKP 221
Score = 122 bits (295), Expect = 6e-27
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V RTQGTKIAS+GLKGRVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHGMDL
Sbjct: 49 VTRTQGTKIASDGLKGRVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGMDL 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
T DK+ MVKKWQT+IEA++DV+
Sbjct: 106 TRDKMCSMVKKWQTMIEAHVDVK 128
Score = 49.2 bits (112), Expect = 9e-05
Identities = 25/48 (52%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELHXXXXXXXXXXXD----KSERPEGYEPPV 640
RKVK+LK+P+FE+ KLMELH D K ER +GYEPPV
Sbjct: 213 RKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPV 260
>UniRef50_A7NWS5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=3; core eudicotyledons|Rep:
Chromosome chr5 scaffold_2, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 656
Score = 124 bits (299), Expect = 2e-27
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V+RTQGTKIASEGLK RVFE+SLADLQAD D +++RK RL AE VQGRNVL NF GMD
Sbjct: 443 VSRTQGTKIASEGLKHRVFEISLADLQADED--QAYRKIRLRAEDVQGRNVLTNFWGMDF 500
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR +V+KWQTLIEA++DV+
Sbjct: 501 TTDKLRSLVRKWQTLIEAHVDVK 523
Score = 105 bits (251), Expect = 1e-21
Identities = 49/94 (52%), Positives = 66/94 (70%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTD Y LR+FCI FT K +KTCYAQ +Q+R IR+KM EI+T T+ +L+E+V K
Sbjct: 523 KTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKK 582
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
IP+SI ++IEKA IYPL++V I + K + P
Sbjct: 583 FIPESIGREIEKATSSIYPLQNVYIRKVKILKAP 616
Score = 35.1 bits (77), Expect = 1.6
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELH 568
RKVK+LK P+F++ KLME+H
Sbjct: 608 RKVKILKAPKFDLGKLMEVH 627
>UniRef50_Q54ZW5 Cluster: 40S ribosomal protein S3A; n=2;
Dictyostelium discoideum|Rep: 40S ribosomal protein S3A
- Dictyostelium discoideum AX4
Length = 273
Score = 112 bits (270), Expect = 7e-24
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VNRTQGTK+AS+GLKGRV+EVSLAD++ D + FRK +L AE V+GRNVL NF+GMDL
Sbjct: 47 VNRTQGTKLASDGLKGRVYEVSLADMK--DDESQVFRKIKLRAEEVEGRNVLTNFYGMDL 104
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
T+DKLR ++ KW TLIE +DV+
Sbjct: 105 TSDKLRSLIHKWSTLIECFVDVK 127
Score = 70.5 bits (165), Expect = 3e-11
Identities = 34/66 (51%), Positives = 49/66 (74%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY LRVF I FT K ++KT YA+ ++V+AIRKKM +I+T V++++L+ VV+
Sbjct: 127 KTTDGYFLRVFAICFTKKGESQKKKTSYAKTSRVKAIRKKMVDILTETVSSNDLKTVVDY 186
Query: 435 LIPDSI 452
LI S+
Sbjct: 187 LIGVSL 192
>UniRef50_Q5EMY6 Cluster: 40S ribosomal protein S1-like protein;
n=9; Dikarya|Rep: 40S ribosomal protein S1-like protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 256
Score = 107 bits (257), Expect = 2e-22
Identities = 54/102 (52%), Positives = 70/102 (68%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VNR+ G K A++ LKGR+FEVSLADLQ D D +FRK +L + VQG+N L NFHG+D
Sbjct: 48 VNRSSGMKNANDALKGRIFEVSLADLQKDED--HAFRKIKLRVDEVQGKNCLTNFHGLDF 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVRQPMDTFYVSSALVSPIRTP 315
T+DKLR +V+KWQ+LIEAN+ V+ D A+ R P
Sbjct: 106 TSDKLRSLVRKWQSLIEANVTVKTTDDYLLRLFAIAVTKRRP 147
Score = 92.7 bits (220), Expect = 7e-18
Identities = 45/94 (47%), Positives = 64/94 (68%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTD Y+LR+F I T + +KT YA +Q+RAIR+KM EII R+ + L+++ NK
Sbjct: 128 KTTDDYLLRLFAIAVTKRRPNQIKKTTYAASSQIRAIRRKMTEIIQREASTCTLQQLTNK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LIP+ I ++IEKA GIYPL++V I + K + P
Sbjct: 188 LIPEVIGREIEKATQGIYPLQNVHIRKVKLLKQP 221
>UniRef50_Q9U4U0 Cluster: Antigen; n=10; Trypanosomatidae|Rep:
Antigen - Leishmania major
Length = 264
Score = 91.9 bits (218), Expect = 1e-17
Identities = 39/82 (47%), Positives = 59/82 (71%)
Frame = +1
Query: 13 NRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLT 192
N+TQGT+IA++ L+GRVFE +LADL E ++RK R + VQGRN+L FH M++T
Sbjct: 50 NKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVT 109
Query: 193 TDKLRWMVKKWQTLIEANIDVR 258
TDK+ +++KW T +E ++V+
Sbjct: 110 TDKMANLLRKWCTTMETTVEVK 131
Score = 63.3 bits (147), Expect = 5e-09
Identities = 28/94 (29%), Positives = 56/94 (59%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KT DGY +R+F + FT + Q + CYA+ V+ +R ++ ++I R ++ +++E V+
Sbjct: 131 KTADGYTMRLFVVAFTKPQANQQSRNCYAKQRLVKWLRMRITKMIKRRLSKVQIKEAVSL 190
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
L + ++ + + C+ I PLR++ I + + R P
Sbjct: 191 LTRNVLSDALVRRCNPILPLRELRIRKVRVVRTP 224
>UniRef50_Q23DE3 Cluster: Ribosomal S3Ae family protein; n=1;
Tetrahymena thermophila SB210|Rep: Ribosomal S3Ae family
protein - Tetrahymena thermophila SB210
Length = 265
Score = 88.2 bits (209), Expect = 2e-16
Identities = 45/133 (33%), Positives = 81/133 (60%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V ++ G +IASE +KGRV E +LADL+ D ++++RK +L+ + V GRN +F+G+D+
Sbjct: 50 VTKSSGNRIASEEIKGRVVESTLADLK-DNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDI 108
Query: 190 TTDKLRWMVKKWQTLIEANIDVRQPMDTFYVSSALVSPIRTP*ANARRATPSTLRSEQSE 369
T D+L M++KWQTLIEA +D + + Y+ + ++++ ST ++ S+
Sbjct: 109 TRDRLCSMIRKWQTLIEARVDCK--TNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQ 166
Query: 370 RKCVKSLHATSLT 408
+ ++ T +T
Sbjct: 167 VRAIRRKINTFIT 179
Score = 78.6 bits (185), Expect = 1e-13
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Frame = +3
Query: 252 CKTTDGYVLRVFCIGFTNKDSL---SQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 422
CKT DGY++RVF + FT K S S TCYA+ +QVRAIR+K+ IT + + E
Sbjct: 130 CKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRRKINTFITNEAAKLGIAE 189
Query: 423 VVNKLIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LI + K IEK I+PL+++ I + K + P
Sbjct: 190 FSKNLIGEDYTKKIEKETKNIFPLQNITIRKVKVLKRP 227
>UniRef50_UPI000049A095 Cluster: 40S ribosomal protein S3a; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S3a - Entamoeba histolytica HM-1:IMSS
Length = 257
Score = 86.2 bits (204), Expect = 6e-16
Identities = 46/83 (55%), Positives = 58/83 (69%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VN+T GT+IASE LKGRV EV+LADL + KF+ E V G++ L FHG+ L
Sbjct: 50 VNKTAGTRIASEQLKGRVVEVNLADLMENEKFGAYNYKFK--CEDVNGKDCLMIFHGLKL 107
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR +VKKW TLIE ++DV+
Sbjct: 108 TTDKLRSIVKKWCTLIETSVDVK 130
Score = 65.3 bits (152), Expect = 1e-09
Identities = 29/70 (41%), Positives = 47/70 (67%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDG+++R+FCIGFT++ S +KT YA+ Q++ IRK M +IT++ + EL + V+
Sbjct: 130 KTTDGHLIRIFCIGFTSRKSNQIKKTSYAKSAQIKKIRKIMNNLITKEAASRELTQFVDY 189
Query: 435 LIPDSIAKDI 464
L + K +
Sbjct: 190 LKKTNFQKKL 199
>UniRef50_UPI000041A636 Cluster: PREDICTED: similar to ribosomal
protein S3a isoform 5; n=18; Eutheria|Rep: PREDICTED:
similar to ribosomal protein S3a isoform 5 - Homo
sapiens
Length = 211
Score = 86.2 bits (204), Expect = 6e-16
Identities = 46/71 (64%), Positives = 55/71 (77%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V RTQGTKIAS+G RVFEVSLADLQ D E +FRKF+LI E VQG+N L NFHG+DL
Sbjct: 49 VTRTQGTKIASDG---RVFEVSLADLQND---EVAFRKFKLITEDVQGKNCLTNFHGVDL 102
Query: 190 TTDKLRWMVKK 222
T+DK+ ++K
Sbjct: 103 TSDKITSQIRK 113
Score = 79.0 bits (186), Expect = 1e-13
Identities = 48/102 (47%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Frame = +3
Query: 363 IRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP-- 536
IRKKM EI+TR+V ++L+EVVNKLIPDSI KD+EKAC IYPL DV + + K + P
Sbjct: 111 IRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDVEKACQSIYPLHDVFVRKVKMLKKPKF 170
Query: 537 -VSRSRS*WNFTAKAVEARGKPETSLNGRRAT--SLPFQESV 653
+ + + +A G ET + RA LP QESV
Sbjct: 171 ELGKLMELHGEGCSSGKATG-DETGVKVERADGYELPVQESV 211
>UniRef50_A0CCR3 Cluster: Chromosome undetermined scaffold_168,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_168,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 291
Score = 81.8 bits (193), Expect = 1e-14
Identities = 45/117 (38%), Positives = 68/117 (58%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
+N++ GT +A+E +KGRV E SLADLQ +D + ++RK +LI + V+G +F+G+D
Sbjct: 46 INKSAGTVVATEAIKGRVVEASLADLQGQSD-QMAWRKVKLIIDDVEGTRCRTSFYGLDS 104
Query: 190 TTDKLRWMVKKWQTLIEANIDVRQPMDTFYVSSALVSPIRTP*ANARRATPSTLRSE 360
T DK+ M+KK QTLIE ++ R Y+ V N +R T RS+
Sbjct: 105 TKDKIFGMIKKRQTLIETQVEARS--QDGYILRIFVIAFTKSIKNQQRKTTYAQRSQ 159
Score = 79.4 bits (187), Expect = 7e-14
Identities = 35/94 (37%), Positives = 61/94 (64%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
++ DGY+LR+F I FT QRKT YAQ +Q++ IRKK+ EI+ ++V+ + +++
Sbjct: 127 RSQDGYILRIFVIAFTKSIKNQQRKTTYAQRSQIKDIRKKIVEIVLKEVSKKSITQLLGF 186
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
+S+AK+I KA I+PL+++ + + K + P
Sbjct: 187 FNQESLAKEIGKATRTIFPLQNITLRKVKLVKRP 220
>UniRef50_A3F4R3 Cluster: Ribosomal protein S3a; n=1; Taenia
asiatica|Rep: Ribosomal protein S3a - Taenia asiatica
(Asian tapeworm)
Length = 183
Score = 79.4 bits (187), Expect = 7e-14
Identities = 38/94 (40%), Positives = 55/94 (58%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY LR F I FT K Q+ YAQ T+++ +R ++ E++ R+V +L+ VV K
Sbjct: 54 KTTDGYTLRFFVIAFTKKQE-DQKSHAYAQTTRIKKLRAEIVEVVQREVARCDLKSVVQK 112
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LIPDSI +D I+PL + + K + P
Sbjct: 113 LIPDSIGQDAMNEASSIFPLSGALVRKVKVLKKP 146
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/48 (66%), Positives = 38/48 (79%)
Frame = +1
Query: 115 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVR 258
FRKF+L E VQGR+ L NFHGMDLT DKL MV KWQ+ IEA++DV+
Sbjct: 7 FRKFKLQVEDVQGRHCLTNFHGMDLTHDKLCGMVLKWQSTIEAHVDVK 54
Score = 41.1 bits (92), Expect = 0.024
Identities = 20/51 (39%), Positives = 30/51 (58%)
Frame = +2
Query: 488 PSARCLHRKVKVLKRPRFEISKLMELHXXXXXXXXXXXDKSERPEGYEPPV 640
P + L RKVKVLK+P+ ++ +++ELH + RP+ YEPPV
Sbjct: 131 PLSGALVRKVKVLKKPKLDLGRILELH--SEGKADEFGEGVPRPDHYEPPV 179
>UniRef50_UPI00015608D3 Cluster: PREDICTED: similar to ribosomal
protein S3a; n=1; Equus caballus|Rep: PREDICTED: similar
to ribosomal protein S3a - Equus caballus
Length = 153
Score = 77.4 bits (182), Expect = 3e-13
Identities = 41/63 (65%), Positives = 47/63 (74%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V RTQGTKIAS+GLKG VFE+SLADLQ D E +FRKF+LI E VQG+ L NF M L
Sbjct: 49 VTRTQGTKIASDGLKGGVFEMSLADLQND---EVAFRKFKLITEDVQGKRCLINFRSMGL 105
Query: 190 TTD 198
+ D
Sbjct: 106 SCD 108
>UniRef50_UPI00005042B8 Cluster: UPI00005042B8 related cluster; n=1;
Rattus norvegicus|Rep: UPI00005042B8 UniRef100 entry -
Rattus norvegicus
Length = 237
Score = 76.2 bits (179), Expect = 7e-13
Identities = 40/95 (42%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFT-NKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVN 431
KT D Y+L +FC+G+T N + R+ AQ+ QV I +I+ D ++L+EV+N
Sbjct: 112 KTADYYLLCLFCVGYTTNVTTRYARQLVCAQYQQVHQIWLITIQIM--DQRRTDLKEVLN 169
Query: 432 KLIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
KL+PD++ KD+EKAC IYPL DV + + K + P
Sbjct: 170 KLVPDNVGKDVEKACQFIYPLHDVFVRKVKILQKP 204
Score = 72.1 bits (169), Expect = 1e-11
Identities = 43/84 (51%), Positives = 54/84 (64%)
Frame = +1
Query: 7 EVNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMD 186
+V R Q TK+ S GL G VFE SLA LQ D RKF+LI E ++G+N L N +GMD
Sbjct: 33 QVLRKQETKMVSVGLNGLVFEASLASLQNDKVV---VRKFKLITEDMRGKNGLTNSYGMD 89
Query: 187 LTTDKLRWMVKKWQTLIEANIDVR 258
LT DK V KWQ ++EA+ DV+
Sbjct: 90 LTWDKRCNKVIKWQ-MVEAHADVK 112
Score = 33.5 bits (73), Expect = 4.8
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELHXXXXXXXXXXXDKSERPEGYEPPV 640
RKVK+L++P+ ++ KL ELH KS+R YEPPV
Sbjct: 196 RKVKILQKPKLDLGKLPELHALGLHGSHR---KSDR---YEPPV 233
>UniRef50_Q8SS05 Cluster: 40S RIBOSOMAL PROTEIN S3A; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S3A
- Encephalitozoon cuniculi
Length = 189
Score = 66.1 bits (154), Expect = 7e-10
Identities = 28/86 (32%), Positives = 54/86 (62%)
Frame = +3
Query: 264 DGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIP 443
DG V RVF +G T + +KTCY +H+ + IRK M ++I +++ ++++++ KL
Sbjct: 83 DGSVFRVFVMGVTRRHPGYVKKTCYVKHSDEKKIRKIMFDVIEEELSGCDVQKIMKKLAN 142
Query: 444 DSIAKDIEKACHGIYPLRDVCIER*K 521
+++ K IE+ I+PL++ C+ + K
Sbjct: 143 ETVGKRIEELGSEIFPLQNCCVRKVK 168
Score = 52.8 bits (121), Expect = 7e-06
Identities = 28/67 (41%), Positives = 40/67 (59%)
Frame = +1
Query: 55 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 234
GR ++V+ ADL + D RKF ++G + F GM+LT+DK + M+KKW TL
Sbjct: 15 GRRYDVNQADLTGNNDV--GHRKFIFKIGDIKGSECVGFFDGMELTSDKHKAMIKKWHTL 72
Query: 235 IEANIDV 255
IEA D+
Sbjct: 73 IEAQKDI 79
>UniRef50_Q7QT21 Cluster: GLP_675_17761_17015; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_675_17761_17015 - Giardia lamblia
ATCC 50803
Length = 248
Score = 54.0 bits (124), Expect = 3e-06
Identities = 30/93 (32%), Positives = 48/93 (51%)
Frame = +3
Query: 258 TTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 437
TTDGY+LRVF I FT++ +RK C+ + +R +R + E + ++ + +V KL
Sbjct: 129 TTDGYLLRVFVIAFTDRFRFQRRKNCHVKGRVIRMMRAGIYETLHNELGKVSIPVLVTKL 188
Query: 438 IPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
+ + +A I RDV I R K + P
Sbjct: 189 SNFEVNAKLTEALQKITMCRDVMIRRVKVVKRP 221
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/82 (32%), Positives = 43/82 (52%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V +T G ++A++ + RV+EV+L DL + KF L + V L NFHGMD+
Sbjct: 46 VTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDI 105
Query: 190 TTDKLRWMVKKWQTLIEANIDV 255
T K + +K I+ +D+
Sbjct: 106 TRHKYGSLFRKGCDCIDVFMDI 127
>UniRef50_A2FDS0 Cluster: Ribosomal protein S3Ae, putative; n=4;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3Ae,
putative - Trichomonas vaginalis G3
Length = 247
Score = 52.4 bits (120), Expect = 1e-05
Identities = 27/94 (28%), Positives = 47/94 (50%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KT DG++LR+F IGFT K + S + YA + R +R M + +T + + ++
Sbjct: 124 KTADGFILRLFTIGFTKKLANSHKNHTYANSHKARQVRDVMIKALTDACEANGVEQLCKD 183
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
+ + I +I + C I + V I + K + P
Sbjct: 184 FVDEKIENEIVEKCKQICQIESVYITKVKVIKAP 217
>UniRef50_A6NFQ6 Cluster: Uncharacterized protein ENSP00000341960;
n=40; Coelomata|Rep: Uncharacterized protein
ENSP00000341960 - Homo sapiens (Human)
Length = 79
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/36 (63%), Positives = 26/36 (72%)
Frame = +3
Query: 429 NKLIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
NKLIPDSI KDIEKAC IYPL DV + + K + P
Sbjct: 1 NKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKP 36
Score = 50.4 bits (115), Expect = 4e-05
Identities = 26/48 (54%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELHXXXXXXXXXXXD----KSERPEGYEPPV 640
RKVK+LK+P+FE+ KLMELH D K ER EGYEPPV
Sbjct: 28 RKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPV 75
>UniRef50_A4D1I1 Cluster: Similar to ribosomal protein S3a; 40S
ribosomal protein S3a; v-fos transformation effector
protein 1; n=2; Eutheria|Rep: Similar to ribosomal
protein S3a; 40S ribosomal protein S3a; v-fos
transformation effector protein 1 - Homo sapiens (Human)
Length = 119
Score = 50.4 bits (115), Expect = 4e-05
Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Frame = +2
Query: 482 HLPSAR--CLHRKVKVLKRPRFEISKLMELHXXXXXXXXXXXD----KSERPEGYEPPV 640
HL +R CL +KVK+LK+P+FE+ KLMELH D K ER EGYEPPV
Sbjct: 58 HLMVSRVMCL-KKVKMLKKPKFELGKLMELHGDSSSSGKAIGDETGAKVERAEGYEPPV 115
>UniRef50_Q9AW90 Cluster: 40S ribosomal Protein S3a; n=1; Guillardia
theta|Rep: 40S ribosomal Protein S3a - Guillardia theta
(Cryptomonas phi)
Length = 219
Score = 47.6 bits (108), Expect = 3e-04
Identities = 25/92 (27%), Positives = 47/92 (51%)
Frame = +1
Query: 40 SEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVK 219
+ + ++++VSLAD+ E S F + + FHG+ LT DK+ ++K
Sbjct: 54 NSSVDNKIYQVSLADILGKE--EFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIK 111
Query: 220 KWQTLIEANIDVRQPMDTFYVSSALVSPIRTP 315
KW TLIE ++ + D +++ L++ + P
Sbjct: 112 KWHTLIEVEVNFK-TKDGYFLKLFLIAQSKKP 142
>UniRef50_Q9YCV8 Cluster: 30S ribosomal protein S3Ae; n=12;
Archaea|Rep: 30S ribosomal protein S3Ae - Aeropyrum
pernix
Length = 214
Score = 40.7 bits (91), Expect = 0.032
Identities = 33/92 (35%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Frame = +3
Query: 258 TTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 437
T DGY LRV + FT R+ C + +Q AIRK M EI+ + S L E++ +
Sbjct: 108 TKDGYGLRVTAMAFT-------RQRC--KTSQKSAIRKVMQEIVEQKARESTLDELIQLM 158
Query: 438 I----PDSIAKDIEKACHGIYPLRDVCIER*K 521
+ S+A I+++ IYPLR V I + K
Sbjct: 159 VFSDHEGSLAYLIDESARKIYPLRKVEIAKSK 190
>UniRef50_Q8Q0F2 Cluster: 30S ribosomal protein S3Ae; n=6;
Euryarchaeota|Rep: 30S ribosomal protein S3Ae -
Methanosarcina mazei (Methanosarcina frisia)
Length = 204
Score = 37.1 bits (82), Expect = 0.39
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +1
Query: 25 GTKIASEG--LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTD 198
GT +A + L GR E ++ +L D ++ K L V G + G +LTTD
Sbjct: 33 GTTMAGDPSLLVGRNVETTVGELT--NDMTKNNTKVILRVNNVVGDIATTDLMGHELTTD 90
Query: 199 KLRWMVKKWQTLIEANIDVR 258
+R +VK+ + I+AN+DVR
Sbjct: 91 YVRSIVKRQTSRIDANVDVR 110
>UniRef50_A2SQ57 Cluster: Ribosomal protein S3Ae; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S3Ae - Methanocorpusculum labreanum (strain ATCC 43576 /
DSM 4855 / Z)
Length = 206
Score = 35.9 bits (79), Expect = 0.91
Identities = 22/71 (30%), Positives = 37/71 (52%)
Frame = +1
Query: 43 EGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKK 222
E + GRV VSL +L D + F+++ V G F+G ++T + +R MVKK
Sbjct: 43 ENVPGRVLTVSLGELIQDYSKQNVRASFKIMN--VAGDAAYTQFNGHEMTKEFVRAMVKK 100
Query: 223 WQTLIEANIDV 255
+ +++ I V
Sbjct: 101 RASRVDSTITV 111
>UniRef50_Q3SAA8 Cluster: SSU ribosomal protein S3AE; n=2;
environmental samples|Rep: SSU ribosomal protein S3AE -
uncultured euryarchaeote Alv-FOS1
Length = 227
Score = 35.1 bits (77), Expect = 1.6
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +1
Query: 55 GRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTL 234
GRV E +L DL + F++ VQG N F G D+TTD +R M+++ ++
Sbjct: 49 GRVAESTLYDLSGNFKKMHVKLYFKI--NRVQGTNAYTRFIGHDMTTDYIRRMIRRRRSR 106
Query: 235 IEANIDV 255
I+ +V
Sbjct: 107 IDMIFNV 113
>UniRef50_A1CC11 Cluster: C6 transcription factor, putative; n=5;
Trichocomaceae|Rep: C6 transcription factor, putative -
Aspergillus clavatus
Length = 646
Score = 34.7 bits (76), Expect = 2.1
Identities = 35/170 (20%), Positives = 70/170 (41%), Gaps = 1/170 (0%)
Frame = -3
Query: 515 PFDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGV 336
P D A + + GLL + G ++ L F ++ A F + + ++
Sbjct: 214 PVDPISAGSLTLLHGLLYYIIRGYLHEECAELARFNLAAYAEFCERQFSNGLNSYEMMRD 273
Query: 335 ARLALAQGVLIGETNAEDT*NVSIGCLTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTL 156
L Q +LIG T A++ N+ + C T + + +C + +H S + +R P+ +
Sbjct: 274 PTLEKIQALLIGITKAQEESNLQL-CWTYLALAFNMCQSMGLHRS-AALRHDPFPVAEAK 331
Query: 155 RPCTYSAINLNLRKDLSASVSACRSARETSKTLPFNPS-EAIFVPWVRLT 9
R +S ++ L+ +++ + F PS + PW +T
Sbjct: 332 RHVFWSLYTIDKNLSLNLGLASHFQNHDIDAEF-FTPSVNPQYCPWDLMT 380
>UniRef50_Q4SVA9 Cluster: Chromosome undetermined SCAF13769, whole
genome shotgun sequence; n=3; Tetraodontidae|Rep:
Chromosome undetermined SCAF13769, whole genome shotgun
sequence - Tetraodon nigroviridis (Green puffer)
Length = 556
Score = 33.9 bits (74), Expect = 3.7
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -3
Query: 251 SMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSAC 87
S+L S+ +C L++ +SLS+ S+ + +LRPC ++ ++L LS VS C
Sbjct: 389 SVLVSLSLCLSLSVLVSLSLSSSLSLSVPVSLRPCLSLSVLVSL--SLSVPVSLC 441
>UniRef50_O27964 Cluster: 30S ribosomal protein S3Ae; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3Ae -
Archaeoglobus fulgidus
Length = 211
Score = 33.9 bits (74), Expect = 3.7
Identities = 26/86 (30%), Positives = 42/86 (48%)
Frame = +3
Query: 258 TTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKL 437
T DGY LRV + FT + + KT +Q RAIR M +I+ ++ + + +
Sbjct: 114 TADGYKLRVKSVVFT----VRRCKT-----SQKRAIRAIMRQIVVEKASSLNFVQFLQEC 164
Query: 438 IPDSIAKDIEKACHGIYPLRDVCIER 515
+ + +I K IYP+R V I +
Sbjct: 165 VLGKVPAEIYKNAKKIYPIRRVEIRK 190
>UniRef50_A4TIH3 Cluster: PTS permease protein; n=11;
Gammaproteobacteria|Rep: PTS permease protein - Yersinia
pestis (strain Pestoides F)
Length = 262
Score = 33.5 bits (73), Expect = 4.8
Identities = 25/94 (26%), Positives = 42/94 (44%)
Frame = -1
Query: 589 LASTAFAVKFHQLRDLETGPLQHFHLSMQTSRRG*MPWQAFSMSLAMESGINLFTTSLSS 410
+A+ AFAV Q ++ G + MQ G AF+M A + T +S
Sbjct: 76 IAAVAFAVMTGQSPEVAMGVGMPIAVLMQMIIIGFFAMTAFTMGRADKYAEQADTAGISR 135
Query: 409 ELVTSRVMISHIFFLIALT*VCWA*HVLRWLKES 308
L+ + + S ++F+IA V + H W+ E+
Sbjct: 136 LLIGTLLTRSMLYFVIAFVTVYFGEHAATWIDEN 169
>UniRef50_Q119K9 Cluster: Putative uncharacterized protein precursor;
n=1; Trichodesmium erythraeum IMS101|Rep: Putative
uncharacterized protein precursor - Trichodesmium
erythraeum (strain IMS101)
Length = 2322
Score = 33.1 bits (72), Expect = 6.4
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -3
Query: 401 DVACNDFTHFLSDCSDLSVLGVARLALAQGVLIGET 294
+V NDF LSD ++S LG+A +A G+LI T
Sbjct: 2048 EVGLNDFQLMLSDRLEMSFLGIANFQVAGGLLINGT 2083
>UniRef50_A0YI31 Cluster: DNA mismatch repair protein; n=5;
Cyanobacteria|Rep: DNA mismatch repair protein - Lyngbya
sp. PCC 8106
Length = 563
Score = 33.1 bits (72), Expect = 6.4
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = -3
Query: 200 LSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSAS--VSACRSARETSKTLPFNPSEAIFV 27
L VR++P ++ + C + I L+L KDL A+ +ACRSA L + +
Sbjct: 463 LWAVRTVP-EMLAQREDCHDALIELSLGKDLQAAQVATACRSAIRNGTPLSLTEMQTLLE 521
Query: 26 PWVR 15
WVR
Sbjct: 522 QWVR 525
>UniRef50_Q22Y97 Cluster: TPR Domain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: TPR Domain containing
protein - Tetrahymena thermophila SB210
Length = 553
Score = 32.7 bits (71), Expect = 8.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 324 RKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEK 470
R CY + Q++ + + D TNSE+ +VNKL +SI K +K
Sbjct: 496 RAKCYVEMKQMQEAIEDYIQCYKLDPTNSEVGVIVNKLKQESILKKKDK 544
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,641,746
Number of Sequences: 1657284
Number of extensions: 13650753
Number of successful extensions: 39339
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39311
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52479343733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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