Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0696
(679 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 95 8e-21
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 95 1e-20
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 28 1.4
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 27 3.3
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.3
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 4.4
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 5.8
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|... 25 7.6
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 95.1 bits (226), Expect = 8e-21
Identities = 43/94 (45%), Positives = 66/94 (70%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY+ RVF IGFT + + +KT YAQ +Q+RAIR+KM ++I ++ +RE+V K
Sbjct: 128 KTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LIP+ I ++IE+A I+PL++V + + K + P
Sbjct: 188 LIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221
Score = 91.5 bits (217), Expect = 1e-19
Identities = 44/83 (53%), Positives = 62/83 (74%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VNRT G K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +
Sbjct: 48 VNRTAGLKNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSI 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
T+DKLR +V+KWQT IEA+ ++
Sbjct: 106 TSDKLRSLVRKWQTTIEADQTIK 128
Score = 32.7 bits (71), Expect = 0.050
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 488 PSARCLHRKVKVLKRPRFEISKLMELH 568
P L RKVK+LK P+ + KL+ELH
Sbjct: 206 PLQNVLVRKVKILKAPKHDAQKLLELH 232
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 94.7 bits (225), Expect = 1e-20
Identities = 46/83 (55%), Positives = 62/83 (74%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
VNRT G K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+
Sbjct: 48 VNRTAGLKNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDM 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
T+DKLR +V+KWQ+ IEAN ++
Sbjct: 106 TSDKLRSLVRKWQSTIEANQTIK 128
Score = 91.9 bits (218), Expect = 8e-20
Identities = 42/94 (44%), Positives = 63/94 (67%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY+ R+F IGFT++ +KT YAQ +Q+RAI +KM ++I ++E+V K
Sbjct: 128 KTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
LIP+ I + IEKA + IYPL++V + + K + P
Sbjct: 188 LIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELH 568
RKVK+LK P+ + KL+ELH
Sbjct: 213 RKVKILKAPKHDAQKLLELH 232
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 27.9 bits (59), Expect = 1.4
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +1
Query: 28 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 207
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 208 WMVKKWQTLIE 240
+ +W ++ E
Sbjct: 145 -FINEWDSIFE 154
>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 707
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 545 SRNGASSTLSPFDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRV 405
SR +STL P D ++ R + V +G+ +QL+ L E+ V
Sbjct: 521 SRKAKASTLKPLDFDVELRASSSYLRTKVYQDGLIDQLLELLSEYYV 567
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 228 LPFFNHPPELIGCEVHAVEVAEHITS 151
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 26.2 bits (55), Expect = 4.4
Identities = 21/95 (22%), Positives = 42/95 (44%)
Frame = +1
Query: 25 GTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKL 204
GT+I S V + + DT +E ++ + Y N + N G D++TD++
Sbjct: 930 GTRIVSSDRDNFVLP-AFGNWTPDTSSE-FMAEYTIRQRYSHVDNSILNIEG-DMSTDRI 986
Query: 205 RWMVKKWQTLIEANIDVRQPMDTFYVSSALVSPIR 309
++ + L E ++ + ++ + VSP R
Sbjct: 987 DLILNEKSKLFETHLAALKSLEDDILQGNTVSPQR 1021
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 287 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 379
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 623
Score = 25.4 bits (53), Expect = 7.6
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = +3
Query: 294 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELRE 422
G T +DS+ ++ A H + R +++K E ++ D +N +++
Sbjct: 7 GITQEDSIEKKSKNVASHGEKRKVKRKK-EDLSMDGSNDGVKD 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,637
Number of Sequences: 5004
Number of extensions: 55539
Number of successful extensions: 179
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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