Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0696
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 120 8e-28
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 120 1e-27
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 120 1e-27
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 30 1.5
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.4
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509... 28 6.0
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.0
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 28 7.9
10_01_0304 - 3356541-3357518 28 7.9
04_03_0983 + 21423086-21423280,21423330-21423404,21423531-214236... 28 7.9
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 120 bits (290), Expect = 8e-28
Identities = 62/83 (74%), Positives = 70/83 (84%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQGRNVL NF GM
Sbjct: 48 VSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKVRLRAEDVQGRNVLTNFWGMSF 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR +VKKWQTLIEA++DV+
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVK 128
Score = 99.1 bits (236), Expect = 3e-21
Identities = 44/94 (46%), Positives = 66/94 (70%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
IP+ I K+IEK+ I+PL++V I + K + P
Sbjct: 188 FIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAP 221
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELH 568
RKVK+LK P+F++ KLME+H
Sbjct: 213 RKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 120 bits (288), Expect = 1e-27
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM
Sbjct: 48 VSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSF 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR +VKKWQTLIEA++DV+
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVK 128
Score = 100 bits (239), Expect = 1e-21
Identities = 44/94 (46%), Positives = 67/94 (71%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTD Y+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDNYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKELVSK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
IP+ I K+IEKA I+PL++V + + K + P
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELHXXXXXXXXXXXDKSERPEGYEPPVSRE 649
RKVK+LK P+F++ KLME+H K ERP E V +E
Sbjct: 213 RKVKILKAPKFDLGKLMEVH---GDYKEDVGTKLERPAEDEVVVGQE 256
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 120 bits (288), Expect = 1e-27
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +1
Query: 10 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
V+RTQGTKIASEGLK RVFEVSLADLQ D D +++RK RL AE VQG+NVL NF GM
Sbjct: 48 VSRTQGTKIASEGLKHRVFEVSLADLQNDED--QAYRKIRLRAEDVQGKNVLTNFWGMSF 105
Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
TTDKLR +VKKWQTLIEA++DV+
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVK 128
Score = 102 bits (245), Expect = 2e-22
Identities = 45/94 (47%), Positives = 68/94 (72%)
Frame = +3
Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
KTTDGY+LR+FCIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+E+V+K
Sbjct: 128 KTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSK 187
Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
IP+ I K+IEKA I+PL++V + + K + P
Sbjct: 188 FIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAP 221
Score = 35.1 bits (77), Expect = 0.052
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = +2
Query: 509 RKVKVLKRPRFEISKLMELH 568
RKVK+LK P+F++ KLME+H
Sbjct: 213 RKVKILKAPKFDLGKLMEVH 232
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = +2
Query: 452 CQGHREGLPWHLPSARCLHRKVKVLKRP 535
C G R P HLPSA HR V RP
Sbjct: 34 CSGCRPASPLHLPSAESAHRPVSSSIRP 61
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 420 EVVNKLIPDSIAKDIEKACHGIYPLRD 500
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>07_03_1564 +
27749899-27750166,27750431-27750507,27750923-27750950,
27751117-27751261,27751351-27751429,27751515-27751633,
27751732-27752073,27754807-27754896,27755730-27755955,
27756398-27756784,27757176-27757496
Length = 693
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 534 GLFNTFTFRCKHRAEGRCHGRPSRCPWQWSQ 442
G + + CK + E +C RP CP+ S+
Sbjct: 509 GCLGIYPYYCKLKHESQCQYRPYTCPYAGSE 539
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 164 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 253
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 479 WHLPSARCLHRKVKVLKRPRFEISK 553
WH C++ +V +LK P E+ K
Sbjct: 271 WHSSGVSCMNNQVHLLKMPNMEVMK 295
>10_01_0304 - 3356541-3357518
Length = 325
Score = 27.9 bits (59), Expect = 7.9
Identities = 25/83 (30%), Positives = 35/83 (42%)
Frame = -1
Query: 286 KTRRTYPSVVLHQCWLR*ESAIF*PST*AYRL*GPCRGSCRAHYVLAHIRRLI*ICGKTF 107
+ RRT V L + E F P+ A RL C+ +CR H + I+ ++ KT
Sbjct: 61 RDRRTGKVVALKRLIGADEGGRFAPNFDALRLEAACQHACRGHPNIVQIKDVV-ADAKTG 119
Query: 106 PRQCQLVDQPGKLRKLFPSILPK 38
L G LR FP P+
Sbjct: 120 DLFLVLEFVGGSLRDEFPRARPE 142
>04_03_0983 +
21423086-21423280,21423330-21423404,21423531-21423632,
21423721-21423774,21423880-21423972,21424526-21424618,
21427329-21427433,21427517-21427615,21427701-21427997,
21428512-21428622
Length = 407
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -3
Query: 206 LSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARETSK 63
+++ +R+ PW L++ R T +A + +KD SA + +S E K
Sbjct: 274 ITIREIRNHPWFLKNLPRELTEAAQAMYYKKDNSAPTYSVQSVEEIMK 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,787,983
Number of Sequences: 37544
Number of extensions: 394460
Number of successful extensions: 1234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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