Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0696
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         129   2e-30
SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)              29   3.5  
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_43050| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  129 bits (311), Expect = 2e-30
 Identities = 59/94 (62%), Positives = 75/94 (79%)
 Frame = +3

Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
           KTTDGY+LR+FCIGFT +     +KT YA+HTQ++AIRKKM +IITR+V+ ++L+EVVNK
Sbjct: 11  KTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMVDIITREVSTNDLKEVVNK 70

Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
           LIPDSI KDIEK+C  IYPL DV I + K  + P
Sbjct: 71  LIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKP 104



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +2

Query: 509 RKVKVLKRPRFEISKLMELH-----XXXXXXXXXXXDKSERPEGYEPPV 640
           RKVKVLK+P+F+I KLME+H                 K +R EG+EPP+
Sbjct: 96  RKVKVLKKPKFDIGKLMEMHGEASSHATTTTTDETGTKIDR-EGFEPPI 143


>SB_21643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1974

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +1

Query: 61   VFEVSLADLQADTDAERSFRKFRLIAEYVQ 150
            +F  + +D+QA+++    FR+F L+ EYV+
Sbjct: 1176 IFNNTFSDVQANSNQIWKFRRFELVMEYVE 1205


>SB_37029| Best HMM Match : 7tm_1 (HMM E-Value=4.2039e-45)
          Length = 1102

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -3

Query: 248  MLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSA--SVSACR 84
            ++ SM +C ++ + +SL   R +   +  +L PC Y  ++++L + +    S+S CR
Sbjct: 948  VVMSMSLCRYVHVVMSLCPCRYVHVVMSMSLCPCRYVVMSMSLCRYIHVVMSMSLCR 1004


>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 122 LRKDLSASVSACRSARETSKTLPFNPSEAIFV 27
           LRK L    S  +  RE  + L FNP E+ +V
Sbjct: 302 LRKQLIDMASVAKDLREIDELLKFNPDESAYV 333


>SB_43050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 461 HREGLPWHLPSARCLHRKVKVLKRPRFEISKLM 559
           H  GLP    S R L + VK+ K P  +IS+L+
Sbjct: 6   HTYGLPNRYGSTRLLRKAVKIPKAPSTDISELI 38


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,339,525
Number of Sequences: 59808
Number of extensions: 449433
Number of successful extensions: 1374
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1372
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)