Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0696
         (679 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.2  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.2  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 128 LNLRKDLSASVSACRSARE 72
           LNLR D+S+S S+  S+ E
Sbjct: 365 LNLRTDISSSSSSISSSEE 383


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/65 (18%), Positives = 29/65 (44%)
 Frame = +1

Query: 112 SFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVRQPMDTFYVSSA 291
           SFR  R+ A    GRN    + G      K+   +++  +++  ++   + ++     S 
Sbjct: 410 SFRISRVAAYNTYGRNAGLRYRGPKQNKPKVLHAIRRGASILRVSMPKIKDVNIIDKYSR 469

Query: 292 LVSPI 306
           ++ P+
Sbjct: 470 IIFPV 474


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 472 AFSMSLAMES-GINLFTTSLSSELVTSRVM 386
           A S+S   E  G +L  T+LSS LV SRV+
Sbjct: 599 ASSVSAGEEGLGNSLAITALSSILVLSRVI 628


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,960
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)