Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0696
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   125   2e-29
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           120   7e-28
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    33   0.23 
At4g11720.1 68417.m01870 hypothetical protein                          29   2.8  
At2g21630.1 68415.m02573 transport protein, putative similar to ...    27   8.6  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  125 bits (302), Expect = 2e-29
 Identities = 63/83 (75%), Positives = 70/83 (84%)
 Frame = +1

Query: 10  VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
           V+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVLC F GMD 
Sbjct: 48  VSRTQGTKIASEGLKHRVFEVSLADLQGDED--NAYRKIRLRAEDVQGRNVLCQFWGMDF 105

Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
           TTDKLR +VKKWQTLIEA++DV+
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVK 128



 Score =  101 bits (243), Expect = 3e-22
 Identities = 44/94 (46%), Positives = 69/94 (73%)
 Frame = +3

Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
           KTTD Y LR+FCI FT + +   ++TCYAQ +Q+R IR+KM +I+ R+ ++ +L+++V K
Sbjct: 128 KTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAK 187

Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
            IP++I ++IEKA  GIYPL++V I + K  + P
Sbjct: 188 FIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221



 Score = 33.9 bits (74), Expect = 0.099
 Identities = 12/20 (60%), Positives = 18/20 (90%)
 Frame = +2

Query: 509 RKVKVLKRPRFEISKLMELH 568
           RKVK+LK P+F++ KLM++H
Sbjct: 213 RKVKILKAPKFDLGKLMDVH 232


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  120 bits (290), Expect = 7e-28
 Identities = 62/83 (74%), Positives = 69/83 (83%)
 Frame = +1

Query: 10  VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDL 189
           V+RTQGTKIASEGLK RVFEVSLADLQ D D   ++RK RL AE VQGRNVL  F GMD 
Sbjct: 48  VSRTQGTKIASEGLKHRVFEVSLADLQNDED--NAYRKIRLRAEDVQGRNVLTQFWGMDF 105

Query: 190 TTDKLRWMVKKWQTLIEANIDVR 258
           TTDKLR +VKKWQTLIEA++DV+
Sbjct: 106 TTDKLRSLVKKWQTLIEAHVDVK 128



 Score =  106 bits (254), Expect = 2e-23
 Identities = 46/94 (48%), Positives = 70/94 (74%)
 Frame = +3

Query: 255 KTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELREVVNK 434
           KTTDGY LR+FCI FT + +   ++TCYAQ +Q+R IR+KM EI+ ++ ++ +L+E+V K
Sbjct: 128 KTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAK 187

Query: 435 LIPDSIAKDIEKACHGIYPLRDVCIER*KC*RGP 536
            IP++I ++IEKA  GIYPL++V I + K  + P
Sbjct: 188 FIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 509 RKVKVLKRPRFEISKLMELH 568
           RKVK+LK P+F++ KLME+H
Sbjct: 213 RKVKILKAPKFDLGKLMEVH 232


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 32/126 (25%), Positives = 52/126 (41%)
 Frame = -3

Query: 503 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSDCSDLSVLGVARLA 324
           +IAQRV  +AG+  +  N +    V  LP F    + C+D  H ++D +  S +    L 
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSD-AHAIADAASKSEI---NLR 481

Query: 323 LAQGVLIGETNAEDT*NVSIGCLTSMLASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCT 144
           +     I  +  E T    +  L  + AS +   F    L+  V  S+P  L       T
Sbjct: 482 VVDSTTITASFDETTTLDDVDKLFKVFASGKPVPFTAESLAPEVQNSIPSSLTRESPYLT 541

Query: 143 YSAINL 126
           +   N+
Sbjct: 542 HPIFNM 547


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 345 HTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIER 515
           H Q   + +KM  ++ RD ++S     ++++  DS  K   +A HGI   RDV +ER
Sbjct: 595 HGQDDDVLQKM--MLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -3

Query: 227 CHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSAR 75
           CHF T+H  L  + + PW + +  RP   + + L +   L  +     +AR
Sbjct: 238 CHF-TLHSVLEELGNSPWPVAADHRPARCTGVALRIAASLLGACFPGSAAR 287


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,781,450
Number of Sequences: 28952
Number of extensions: 305197
Number of successful extensions: 905
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 903
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)