Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0695
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   4.5  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   5.9  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 421 FCEVINRFTGPP*I*NPTL*F 359
           F E I RF  PP + NPTL F
Sbjct: 96  FMEAIERFIEPPSVSNPTLMF 116


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 487 HCVWAPSLRQILSCCLLKKIRCSAFIHCLSYFPN 588
           H +  PSLR  L    L+K  C+  +  L+YFP+
Sbjct: 364 HIINQPSLRSALHERPLQKSLCAILLLPLTYFPS 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,613
Number of Sequences: 5004
Number of extensions: 54673
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)