Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0695
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0668 + 30749474-30750007,30750818-30751403,30751405-307524...    31   1.2  
02_04_0539 - 23745936-23746097,23746661-23747566                       29   2.7  
03_06_0238 - 32570222-32570330,32570538-32570599,32570658-325708...    28   6.2  
06_01_0272 + 2016836-2017963                                           28   8.1  

>02_05_0668 + 30749474-30750007,30750818-30751403,30751405-30752497,
            30753105-30753255,30754055-30754870
          Length = 1059

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -3

Query: 284  GLFINFAKCLIMKLDADTIRLHVRALTHVPKSSFAYKRMREGSEG 150
            G  +  AK    K DAD IRL VR+L    +S F+   + +   G
Sbjct: 946  GCILKMAKNFTKKSDADAIRLAVRSLRKEARSRFSEMSLDDNGHG 990


>02_04_0539 - 23745936-23746097,23746661-23747566
          Length = 355

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/70 (21%), Positives = 27/70 (38%)
 Frame = +1

Query: 481 ELHCVWAPSLRQILSCCLLKKIRCSAFIHCLSYFPNXXXXXXXXXXXXXXVIHPYRSVPF 660
           E+   WAP +R+  +  +LK I     IHC   F                +++       
Sbjct: 139 EMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRFRIVNCKNDGCL 198

Query: 661 PNINPDHIER 690
            + + +HIE+
Sbjct: 199 ASFSANHIEK 208


>03_06_0238 -
           32570222-32570330,32570538-32570599,32570658-32570883,
           32571165-32571532,32571644-32571743,32571817-32571879,
           32573077-32573123,32573222-32573353
          Length = 368

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 255 NHEARRRHNQITRKGSHARPKIIICLQTNA 166
           +H   RR    +R GSH+RP+I++  +  A
Sbjct: 141 SHRHGRRDGHRSRSGSHSRPQIVVFSRNEA 170


>06_01_0272 + 2016836-2017963
          Length = 375

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 261 MFNHEARRR-HNQITRKGSHARPKIIICLQT 172
           +FNHE+ RR  N +TRK + A  +I + LQT
Sbjct: 214 LFNHESPRRGENFVTRKITRAVGRIKVGLQT 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,840,011
Number of Sequences: 37544
Number of extensions: 309100
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)